Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
TRAIPQ9BWF2 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 KRT18P65-201ENST00000439811 1286 ntBASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 MTCL1P1-201ENST00000446207 792 ntBASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 AF238378.1-201ENST00000526806 358 ntBASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.69■□□□□ 0.74
TRAIPQ9BWF2 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 AC026471.1-201ENST00000564629 3026 ntBASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 ANO7L1-203ENST00000602586 1720 ntBASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 PPIE-208ENST00000470213 927 ntTSL 3 BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 AL591684.3-201ENST00000605187 298 ntBASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 AL138831.2-201ENST00000606564 490 ntBASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TRAIPQ9BWF2 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 AC009533.2-201ENST00000543664 586 ntBASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.67■□□□□ 0.74
TRAIPQ9BWF2 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 LETM1P2-201ENST00000597330 2178 ntBASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TRAIPQ9BWF2 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms