Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.39■□□□□ 0.53
TRIM56Q9BRZ2 AC104390.1-201ENST00000555663 520 ntBASIC18.39■□□□□ 0.53
TRIM56Q9BRZ2 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM56Q9BRZ2 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
TRIM56Q9BRZ2 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.39■□□□□ 0.53
TRIM56Q9BRZ2 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM56Q9BRZ2 LINC01023-201ENST00000606054 436 ntBASIC18.39■□□□□ 0.53
TRIM56Q9BRZ2 FAM87A-204ENST00000613235 858 ntBASIC18.39■□□□□ 0.53
TRIM56Q9BRZ2 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM56Q9BRZ2 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
TRIM56Q9BRZ2 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM56Q9BRZ2 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
TRIM56Q9BRZ2 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM56Q9BRZ2 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 AC093010.1-201ENST00000473625 1624 ntBASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.38■□□□□ 0.53
TRIM56Q9BRZ2 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 AC009947.2-201ENST00000444014 672 ntBASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 FAM210CP-201ENST00000445714 574 ntBASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 SEC1P-202ENST00000473944 940 ntBASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 EGLN1P1-201ENST00000531623 762 ntBASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 AC024243.1-201ENST00000609234 778 ntBASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC18.37■□□□□ 0.53
TRIM56Q9BRZ2 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 KRT8P7-201ENST00000533003 1432 ntBASIC18.36■□□□□ 0.53
TRIM56Q9BRZ2 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms