Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
NPAS1Q99742 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.4■□□□□ 0.22
NPAS1Q99742 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
NPAS1Q99742 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NPAS1Q99742 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NPAS1Q99742 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.4■□□□□ 0.22
NPAS1Q99742 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
NPAS1Q99742 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NPAS1Q99742 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.4■□□□□ 0.22
NPAS1Q99742 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.4■□□□□ 0.22
NPAS1Q99742 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
NPAS1Q99742 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.4■□□□□ 0.22
NPAS1Q99742 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NPAS1Q99742 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NPAS1Q99742 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.22
NPAS1Q99742 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
NPAS1Q99742 AC016734.2-201ENST00000624325 1377 ntBASIC16.39■□□□□ 0.21
NPAS1Q99742 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS1Q99742 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC16.39■□□□□ 0.21
NPAS1Q99742 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS1Q99742 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS1Q99742 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
NPAS1Q99742 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS1Q99742 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS1Q99742 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.39■□□□□ 0.21
NPAS1Q99742 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.39■□□□□ 0.21
NPAS1Q99742 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.39■□□□□ 0.21
NPAS1Q99742 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS1Q99742 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
NPAS1Q99742 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.39■□□□□ 0.21
NPAS1Q99742 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
NPAS1Q99742 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS1Q99742 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.39■□□□□ 0.21
NPAS1Q99742 AC113404.2-201ENST00000507884 177 ntBASIC16.39■□□□□ 0.21
NPAS1Q99742 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.39■□□□□ 0.21
NPAS1Q99742 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.39■□□□□ 0.21
NPAS1Q99742 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
NPAS1Q99742 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.39■□□□□ 0.21
NPAS1Q99742 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.39■□□□□ 0.21
NPAS1Q99742 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.39■□□□□ 0.21
NPAS1Q99742 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS1Q99742 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS1Q99742 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS1Q99742 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS1Q99742 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS1Q99742 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS1Q99742 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS1Q99742 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS1Q99742 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS1Q99742 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS1Q99742 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.39■□□□□ 0.21
NPAS1Q99742 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS1Q99742 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS1Q99742 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS1Q99742 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS1Q99742 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
NPAS1Q99742 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS1Q99742 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS1Q99742 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.39■□□□□ 0.21
NPAS1Q99742 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
NPAS1Q99742 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
NPAS1Q99742 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.38■□□□□ 0.21
NPAS1Q99742 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
NPAS1Q99742 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
NPAS1Q99742 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
NPAS1Q99742 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
NPAS1Q99742 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.38■□□□□ 0.21
NPAS1Q99742 TNRC18P3-201ENST00000441896 2691 ntBASIC16.38■□□□□ 0.21
NPAS1Q99742 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
NPAS1Q99742 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NPAS1Q99742 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.38■□□□□ 0.21
NPAS1Q99742 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NPAS1Q99742 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.38■□□□□ 0.21
NPAS1Q99742 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
NPAS1Q99742 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.38■□□□□ 0.21
NPAS1Q99742 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.38■□□□□ 0.21
NPAS1Q99742 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.38■□□□□ 0.21
NPAS1Q99742 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC16.38■□□□□ 0.21
NPAS1Q99742 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.38■□□□□ 0.21
NPAS1Q99742 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
NPAS1Q99742 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.38■□□□□ 0.21
NPAS1Q99742 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.38■□□□□ 0.21
NPAS1Q99742 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NPAS1Q99742 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
NPAS1Q99742 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC16.38■□□□□ 0.21
NPAS1Q99742 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
NPAS1Q99742 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NPAS1Q99742 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
NPAS1Q99742 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NPAS1Q99742 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NPAS1Q99742 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
NPAS1Q99742 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
NPAS1Q99742 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
NPAS1Q99742 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
NPAS1Q99742 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
NPAS1Q99742 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
NPAS1Q99742 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
NPAS1Q99742 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
NPAS1Q99742 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
NPAS1Q99742 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms