Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC13.51□□□□□ -0.25
LINC00477Q96M19 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
LINC00477Q96M19 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
LINC00477Q96M19 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00477Q96M19 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
LINC00477Q96M19 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00477Q96M19 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
LINC00477Q96M19 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00477Q96M19 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00477Q96M19 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00477Q96M19 TSPY14P-201ENST00000303979 915 ntBASIC13.51□□□□□ -0.25
LINC00477Q96M19 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC13.51□□□□□ -0.25
LINC00477Q96M19 EGLN1P1-201ENST00000531623 762 ntBASIC13.51□□□□□ -0.25
LINC00477Q96M19 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC13.51□□□□□ -0.25
LINC00477Q96M19 ETFA-216ENST00000560726 942 ntTSL 3 BASIC13.51□□□□□ -0.25
LINC00477Q96M19 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC13.51□□□□□ -0.25
LINC00477Q96M19 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC13.51□□□□□ -0.25
LINC00477Q96M19 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC13.51□□□□□ -0.25
LINC00477Q96M19 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00477Q96M19 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00477Q96M19 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC13.51□□□□□ -0.25
LINC00477Q96M19 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00477Q96M19 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00477Q96M19 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00477Q96M19 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC13.51□□□□□ -0.25
LINC00477Q96M19 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00477Q96M19 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
LINC00477Q96M19 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00477Q96M19 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00477Q96M19 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC13.51□□□□□ -0.25
LINC00477Q96M19 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00477Q96M19 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC13.51□□□□□ -0.25
LINC00477Q96M19 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00477Q96M19 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC13.5□□□□□ -0.25
LINC00477Q96M19 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
LINC00477Q96M19 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC13.5□□□□□ -0.25
LINC00477Q96M19 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
LINC00477Q96M19 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
LINC00477Q96M19 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC13.5□□□□□ -0.25
LINC00477Q96M19 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC13.5□□□□□ -0.25
LINC00477Q96M19 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
LINC00477Q96M19 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC13.5□□□□□ -0.25
LINC00477Q96M19 MIR1238-201ENST00000408483 83 ntBASIC13.5□□□□□ -0.25
LINC00477Q96M19 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC13.5□□□□□ -0.25
LINC00477Q96M19 AC008550.1-201ENST00000511500 884 ntBASIC13.5□□□□□ -0.25
LINC00477Q96M19 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC13.5□□□□□ -0.25
LINC00477Q96M19 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC13.5□□□□□ -0.25
LINC00477Q96M19 REEP1-209ENST00000541910 969 ntTSL 2 BASIC13.5□□□□□ -0.25
LINC00477Q96M19 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC13.5□□□□□ -0.25
LINC00477Q96M19 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC13.5□□□□□ -0.25
LINC00477Q96M19 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC13.5□□□□□ -0.25
LINC00477Q96M19 AP000525.1-201ENST00000608286 694 ntBASIC13.5□□□□□ -0.25
LINC00477Q96M19 GLDC-219ENST00000640208 420 ntTSL 2 BASIC13.5□□□□□ -0.25
LINC00477Q96M19 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
LINC00477Q96M19 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
LINC00477Q96M19 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
LINC00477Q96M19 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
LINC00477Q96M19 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00477Q96M19 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC13.49□□□□□ -0.25
LINC00477Q96M19 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00477Q96M19 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00477Q96M19 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00477Q96M19 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC13.49□□□□□ -0.25
LINC00477Q96M19 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
LINC00477Q96M19 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC13.49□□□□□ -0.25
LINC00477Q96M19 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00477Q96M19 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC13.49□□□□□ -0.25
LINC00477Q96M19 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00477Q96M19 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00477Q96M19 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00477Q96M19 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00477Q96M19 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
LINC00477Q96M19 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC13.49□□□□□ -0.25
LINC00477Q96M19 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms