Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NPAS3Q8IXF0 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
NPAS3Q8IXF0 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NPAS3Q8IXF0 GMCL1P1-201ENST00000463439 1581 ntBASIC18.57■□□□□ 0.56
NPAS3Q8IXF0 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.57■□□□□ 0.56
NPAS3Q8IXF0 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.57■□□□□ 0.56
NPAS3Q8IXF0 UPF3AP3-201ENST00000420996 769 ntBASIC18.57■□□□□ 0.56
NPAS3Q8IXF0 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.57■□□□□ 0.56
NPAS3Q8IXF0 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.57■□□□□ 0.56
NPAS3Q8IXF0 UNC93B6-202ENST00000528242 690 ntBASIC18.57■□□□□ 0.56
NPAS3Q8IXF0 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC18.57■□□□□ 0.56
NPAS3Q8IXF0 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC18.57■□□□□ 0.56
NPAS3Q8IXF0 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.57■□□□□ 0.56
NPAS3Q8IXF0 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
NPAS3Q8IXF0 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
NPAS3Q8IXF0 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NPAS3Q8IXF0 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
NPAS3Q8IXF0 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.57■□□□□ 0.56
NPAS3Q8IXF0 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 BX005266.1-201ENST00000473402 457 ntBASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 AC010327.4-202ENST00000591484 748 ntBASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
NPAS3Q8IXF0 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 HS6ST1P1-201ENST00000481504 1234 ntBASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 CYGB-205ENST00000590175 830 ntTSL 3 BASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 AC079776.2-201ENST00000641154 1609 ntBASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NPAS3Q8IXF0 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 RPSAP43-201ENST00000402237 625 ntBASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 GPX1P2-201ENST00000429271 606 ntBASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
NPAS3Q8IXF0 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
NPAS3Q8IXF0 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms