Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
RNF20Q5VTR2 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
RNF20Q5VTR2 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
RNF20Q5VTR2 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 AC005332.8-201ENST00000622750 2735 ntBASIC21.51■■□□□ 1.03
RNF20Q5VTR2 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 FGF14-AS2-201ENST00000606448 1074 ntBASIC21.51■■□□□ 1.03
RNF20Q5VTR2 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 GNE-204ENST00000539208 2190 ntTSL 2 BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
RNF20Q5VTR2 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 COPE-203ENST00000351079 907 ntTSL 2 BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 AL359075.1-203ENST00000462729 1002 ntBASIC21.5■■□□□ 1.03
RNF20Q5VTR2 AC092597.1-201ENST00000487352 616 ntBASIC21.5■■□□□ 1.03
RNF20Q5VTR2 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 LITAF-220ENST00000620789 692 ntTSL 5 BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
RNF20Q5VTR2 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 KRT18P65-201ENST00000439811 1286 ntBASIC21.49■■□□□ 1.03
RNF20Q5VTR2 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 RBM42-202ENST00000586618 771 ntTSL 3 BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 PCDHB18P-201ENST00000524813 2368 ntBASIC21.49■■□□□ 1.03
RNF20Q5VTR2 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC21.49■■□□□ 1.03
RNF20Q5VTR2 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC21.49■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms