Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
RNFT1Q5M7Z0 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC16.17■□□□□ 0.18
RNFT1Q5M7Z0 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.17■□□□□ 0.18
RNFT1Q5M7Z0 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNFT1Q5M7Z0 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RNFT1Q5M7Z0 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC16.17■□□□□ 0.18
RNFT1Q5M7Z0 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
RNFT1Q5M7Z0 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RNFT1Q5M7Z0 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RNFT1Q5M7Z0 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNFT1Q5M7Z0 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNFT1Q5M7Z0 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 KRT8P47-201ENST00000604727 1398 ntBASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 RPS2P1-201ENST00000434010 821 ntBASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 AC010460.3-201ENST00000511359 1579 ntBASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 AC139887.3-201ENST00000568585 713 ntBASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 AC116407.3-201ENST00000623905 1129 ntBASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 AC097374.2-201ENST00000618617 1306 ntBASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNFT1Q5M7Z0 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
RNFT1Q5M7Z0 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.14■□□□□ 0.18
RNFT1Q5M7Z0 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.18
RNFT1Q5M7Z0 TBC1D3P5-201ENST00000579401 1545 ntBASIC16.14■□□□□ 0.18
RNFT1Q5M7Z0 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.14■□□□□ 0.17
RNFT1Q5M7Z0 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.14■□□□□ 0.17
RNFT1Q5M7Z0 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNFT1Q5M7Z0 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNFT1Q5M7Z0 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RNFT1Q5M7Z0 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
RNFT1Q5M7Z0 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.14■□□□□ 0.17
RNFT1Q5M7Z0 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNFT1Q5M7Z0 AL356309.3-201ENST00000624132 1934 ntBASIC16.14■□□□□ 0.17
RNFT1Q5M7Z0 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
RNFT1Q5M7Z0 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.14■□□□□ 0.17
RNFT1Q5M7Z0 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms