Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
RPS28P62857 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
RPS28P62857 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
RPS28P62857 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
RPS28P62857 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
RPS28P62857 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC10.38□□□□□ -0.75
RPS28P62857 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
RPS28P62857 DYNLL1-208ENST00000550178 581 ntBASIC10.38□□□□□ -0.75
RPS28P62857 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
RPS28P62857 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
RPS28P62857 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC10.38□□□□□ -0.75
RPS28P62857 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
RPS28P62857 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
RPS28P62857 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC10.38□□□□□ -0.75
RPS28P62857 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC10.38□□□□□ -0.75
RPS28P62857 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC10.38□□□□□ -0.75
RPS28P62857 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC10.38□□□□□ -0.75
RPS28P62857 APP-205ENST00000358918 2366 ntTSL 5 BASIC10.38□□□□□ -0.75
RPS28P62857 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC10.38□□□□□ -0.75
RPS28P62857 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
RPS28P62857 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
RPS28P62857 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC10.38□□□□□ -0.75
RPS28P62857 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
RPS28P62857 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC10.38□□□□□ -0.75
RPS28P62857 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
RPS28P62857 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC10.37□□□□□ -0.75
RPS28P62857 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
RPS28P62857 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC10.37□□□□□ -0.75
RPS28P62857 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
RPS28P62857 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC10.37□□□□□ -0.75
RPS28P62857 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
RPS28P62857 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
RPS28P62857 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.75
RPS28P62857 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
RPS28P62857 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
RPS28P62857 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC10.37□□□□□ -0.75
RPS28P62857 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC10.37□□□□□ -0.75
RPS28P62857 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
RPS28P62857 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
RPS28P62857 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
RPS28P62857 PCDHB3-201ENST00000231130 3355 ntAPPRIS P1 BASIC10.37□□□□□ -0.75
RPS28P62857 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
RPS28P62857 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
RPS28P62857 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC10.37□□□□□ -0.75
RPS28P62857 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC10.37□□□□□ -0.75
RPS28P62857 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
RPS28P62857 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
RPS28P62857 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC10.37□□□□□ -0.75
RPS28P62857 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
RPS28P62857 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
RPS28P62857 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC10.37□□□□□ -0.75
RPS28P62857 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC10.37□□□□□ -0.75
RPS28P62857 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
RPS28P62857 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
RPS28P62857 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
RPS28P62857 POLL-217ENST00000628479 1953 ntTSL 5 BASIC10.37□□□□□ -0.75
RPS28P62857 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
RPS28P62857 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
RPS28P62857 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC10.37□□□□□ -0.75
RPS28P62857 GALC-206ENST00000544807 2528 ntTSL 2 BASIC10.37□□□□□ -0.75
RPS28P62857 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC10.37□□□□□ -0.75
RPS28P62857 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC10.37□□□□□ -0.75
RPS28P62857 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
RPS28P62857 AC027601.5-201ENST00000624065 2482 ntBASIC10.36□□□□□ -0.75
RPS28P62857 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
RPS28P62857 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
RPS28P62857 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
RPS28P62857 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
RPS28P62857 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
RPS28P62857 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC10.36□□□□□ -0.75
RPS28P62857 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC10.36□□□□□ -0.75
RPS28P62857 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
RPS28P62857 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
RPS28P62857 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC10.36□□□□□ -0.75
RPS28P62857 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC10.36□□□□□ -0.75
RPS28P62857 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
RPS28P62857 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
RPS28P62857 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC10.36□□□□□ -0.75
RPS28P62857 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
RPS28P62857 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC10.36□□□□□ -0.75
RPS28P62857 AL138688.1-201ENST00000624851 1594 ntBASIC10.36□□□□□ -0.75
RPS28P62857 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
RPS28P62857 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC10.36□□□□□ -0.75
RPS28P62857 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
RPS28P62857 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
RPS28P62857 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
RPS28P62857 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC10.36□□□□□ -0.75
RPS28P62857 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC10.36□□□□□ -0.75
RPS28P62857 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC10.36□□□□□ -0.75
RPS28P62857 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC10.36□□□□□ -0.75
RPS28P62857 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
RPS28P62857 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
RPS28P62857 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
RPS28P62857 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC10.36□□□□□ -0.75
RPS28P62857 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
RPS28P62857 AC023157.3-201ENST00000619086 2088 ntBASIC10.36□□□□□ -0.75
RPS28P62857 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
RPS28P62857 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
RPS28P62857 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC10.36□□□□□ -0.75
RPS28P62857 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC10.36□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms