Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A4P53420 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A4P53420 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.13■□□□□ 0.65
COL4A4P53420 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC19.13■□□□□ 0.65
COL4A4P53420 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC19.13■□□□□ 0.65
COL4A4P53420 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC19.13■□□□□ 0.65
COL4A4P53420 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A4P53420 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC19.13■□□□□ 0.65
COL4A4P53420 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC19.13■□□□□ 0.65
COL4A4P53420 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A4P53420 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
COL4A4P53420 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC19.13■□□□□ 0.65
COL4A4P53420 CNN2P11-201ENST00000429351 262 ntBASIC19.13■□□□□ 0.65
COL4A4P53420 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC19.13■□□□□ 0.65
COL4A4P53420 COX5A-206ENST00000568783 571 ntTSL 3 BASIC19.13■□□□□ 0.65
COL4A4P53420 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
COL4A4P53420 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC19.13■□□□□ 0.65
COL4A4P53420 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC19.13■□□□□ 0.65
COL4A4P53420 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
COL4A4P53420 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC19.13■□□□□ 0.65
COL4A4P53420 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A4P53420 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC19.13■□□□□ 0.65
COL4A4P53420 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL4A4P53420 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.13■□□□□ 0.65
COL4A4P53420 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.12■□□□□ 0.65
COL4A4P53420 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL4A4P53420 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL4A4P53420 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL4A4P53420 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC19.12■□□□□ 0.65
COL4A4P53420 KRT18P2-201ENST00000447938 1258 ntBASIC19.12■□□□□ 0.65
COL4A4P53420 AC136632.2-201ENST00000512891 861 ntBASIC19.12■□□□□ 0.65
COL4A4P53420 PUS1-205ENST00000535067 838 ntTSL 3 BASIC19.12■□□□□ 0.65
COL4A4P53420 RPL28-205ENST00000558131 444 ntTSL 5 BASIC19.12■□□□□ 0.65
COL4A4P53420 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC19.12■□□□□ 0.65
COL4A4P53420 MIR4469-201ENST00000583919 79 ntBASIC19.12■□□□□ 0.65
COL4A4P53420 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC19.12■□□□□ 0.65
COL4A4P53420 AC006557.2-201ENST00000592985 1240 ntBASIC19.12■□□□□ 0.65
COL4A4P53420 AC106028.4-201ENST00000614509 607 ntBASIC19.12■□□□□ 0.65
COL4A4P53420 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL4A4P53420 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL4A4P53420 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL4A4P53420 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL4A4P53420 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL4A4P53420 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.12■□□□□ 0.65
COL4A4P53420 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL4A4P53420 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL4A4P53420 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL4A4P53420 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.12■□□□□ 0.65
COL4A4P53420 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
COL4A4P53420 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC19.11■□□□□ 0.65
COL4A4P53420 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A4P53420 TSEN15P1-201ENST00000423257 515 ntBASIC19.11■□□□□ 0.65
COL4A4P53420 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.11■□□□□ 0.65
COL4A4P53420 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC19.11■□□□□ 0.65
COL4A4P53420 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC19.11■□□□□ 0.65
COL4A4P53420 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC19.11■□□□□ 0.65
COL4A4P53420 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A4P53420 AC005829.1-201ENST00000570002 483 ntBASIC19.11■□□□□ 0.65
COL4A4P53420 TCAP-202ENST00000578283 583 ntTSL 5 BASIC19.11■□□□□ 0.65
COL4A4P53420 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
COL4A4P53420 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A4P53420 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.11■□□□□ 0.65
COL4A4P53420 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A4P53420 ADK-206ENST00000541550 2222 ntTSL 2 BASIC19.11■□□□□ 0.65
COL4A4P53420 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC19.11■□□□□ 0.65
COL4A4P53420 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A4P53420 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.11■□□□□ 0.65
COL4A4P53420 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A4P53420 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A4P53420 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC19.11■□□□□ 0.65
COL4A4P53420 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC19.11■□□□□ 0.65
COL4A4P53420 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC19.11■□□□□ 0.65
COL4A4P53420 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL4A4P53420 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC19.11■□□□□ 0.65
COL4A4P53420 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
COL4A4P53420 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC19.11■□□□□ 0.65
COL4A4P53420 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC19.11■□□□□ 0.65
COL4A4P53420 LINC01126-201ENST00000623515 1646 ntBASIC19.11■□□□□ 0.65
COL4A4P53420 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
COL4A4P53420 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A4P53420 AC099343.3-201ENST00000605834 2503 ntBASIC19.1■□□□□ 0.65
COL4A4P53420 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC19.1■□□□□ 0.65
COL4A4P53420 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC19.1■□□□□ 0.65
COL4A4P53420 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A4P53420 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A4P53420 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A4P53420 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A4P53420 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A4P53420 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC19.1■□□□□ 0.65
COL4A4P53420 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A4P53420 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.1■□□□□ 0.65
COL4A4P53420 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A4P53420 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A4P53420 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19.1■□□□□ 0.65
COL4A4P53420 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL4A4P53420 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC19.1■□□□□ 0.65
COL4A4P53420 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC19.1■□□□□ 0.65
COL4A4P53420 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC19.1■□□□□ 0.65
COL4A4P53420 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC19.1■□□□□ 0.65
COL4A4P53420 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms