Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RFC3P40938 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RFC3P40938 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
RFC3P40938 AC009078.2-202ENST00000463353 338 ntBASIC16.47■□□□□ 0.23
RFC3P40938 AC096582.2-201ENST00000510860 516 ntBASIC16.47■□□□□ 0.23
RFC3P40938 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC16.47■□□□□ 0.23
RFC3P40938 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.47■□□□□ 0.23
RFC3P40938 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.47■□□□□ 0.23
RFC3P40938 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.47■□□□□ 0.23
RFC3P40938 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC16.47■□□□□ 0.23
RFC3P40938 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RFC3P40938 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
RFC3P40938 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RFC3P40938 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RFC3P40938 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC16.47■□□□□ 0.23
RFC3P40938 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RFC3P40938 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
RFC3P40938 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
RFC3P40938 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
RFC3P40938 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
RFC3P40938 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RFC3P40938 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RFC3P40938 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RFC3P40938 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
RFC3P40938 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC16.47■□□□□ 0.23
RFC3P40938 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
RFC3P40938 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.46■□□□□ 0.23
RFC3P40938 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RFC3P40938 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
RFC3P40938 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RFC3P40938 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RFC3P40938 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RFC3P40938 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
RFC3P40938 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RFC3P40938 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
RFC3P40938 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RFC3P40938 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.46■□□□□ 0.23
RFC3P40938 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
RFC3P40938 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RFC3P40938 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.46■□□□□ 0.23
RFC3P40938 DDT-206ENST00000430101 573 ntTSL 2 BASIC16.46■□□□□ 0.23
RFC3P40938 FAAHP1-202ENST00000446499 1238 ntBASIC16.46■□□□□ 0.23
RFC3P40938 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.46■□□□□ 0.23
RFC3P40938 AC113404.2-201ENST00000507884 177 ntBASIC16.46■□□□□ 0.23
RFC3P40938 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.46■□□□□ 0.23
RFC3P40938 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.46■□□□□ 0.23
RFC3P40938 AC008687.5-201ENST00000593746 558 ntBASIC16.46■□□□□ 0.23
RFC3P40938 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.46■□□□□ 0.23
RFC3P40938 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
RFC3P40938 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC16.46■□□□□ 0.23
RFC3P40938 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RFC3P40938 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RFC3P40938 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
RFC3P40938 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
RFC3P40938 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
RFC3P40938 AL031598.1-201ENST00000561511 1773 ntBASIC16.46■□□□□ 0.22
RFC3P40938 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
RFC3P40938 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
RFC3P40938 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
RFC3P40938 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
RFC3P40938 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
RFC3P40938 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
RFC3P40938 KRT8P10-201ENST00000450021 1447 ntBASIC16.45■□□□□ 0.22
RFC3P40938 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFC3P40938 CROCCP3-202ENST00000420820 1947 ntBASIC16.45■□□□□ 0.22
RFC3P40938 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
RFC3P40938 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.45■□□□□ 0.22
RFC3P40938 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFC3P40938 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFC3P40938 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFC3P40938 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFC3P40938 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFC3P40938 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFC3P40938 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFC3P40938 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.45■□□□□ 0.22
RFC3P40938 KRT16P4-201ENST00000453883 522 ntBASIC16.45■□□□□ 0.22
RFC3P40938 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
RFC3P40938 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.45■□□□□ 0.22
RFC3P40938 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC16.45■□□□□ 0.22
RFC3P40938 AL353801.3-201ENST00000609898 542 ntBASIC16.45■□□□□ 0.22
RFC3P40938 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC16.45■□□□□ 0.22
RFC3P40938 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.45■□□□□ 0.22
RFC3P40938 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFC3P40938 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFC3P40938 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFC3P40938 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
RFC3P40938 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
RFC3P40938 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
RFC3P40938 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
RFC3P40938 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.45■□□□□ 0.22
RFC3P40938 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFC3P40938 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFC3P40938 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
RFC3P40938 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFC3P40938 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
RFC3P40938 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
RFC3P40938 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.44■□□□□ 0.22
RFC3P40938 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
RFC3P40938 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC16.44■□□□□ 0.22
RFC3P40938 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms