Protein–RNA interactions for Protein: O43353

RIPK2, Receptor-interacting serine/threonine-protein kinase 2, humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK2O43353 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
RIPK2O43353 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
RIPK2O43353 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.3■□□□□ 0.52
RIPK2O43353 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
RIPK2O43353 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
RIPK2O43353 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
RIPK2O43353 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC18.29■□□□□ 0.52
RIPK2O43353 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
RIPK2O43353 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
RIPK2O43353 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RIPK2O43353 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RIPK2O43353 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
RIPK2O43353 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
RIPK2O43353 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RIPK2O43353 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RIPK2O43353 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RIPK2O43353 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RIPK2O43353 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.29■□□□□ 0.52
RIPK2O43353 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RIPK2O43353 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RIPK2O43353 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RIPK2O43353 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.29■□□□□ 0.52
RIPK2O43353 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
RIPK2O43353 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RIPK2O43353 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RIPK2O43353 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RIPK2O43353 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
RIPK2O43353 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
RIPK2O43353 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
RIPK2O43353 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RIPK2O43353 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
RIPK2O43353 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.28■□□□□ 0.52
RIPK2O43353 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
RIPK2O43353 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.28■□□□□ 0.52
RIPK2O43353 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RIPK2O43353 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
RIPK2O43353 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.28■□□□□ 0.52
RIPK2O43353 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RIPK2O43353 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RIPK2O43353 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RIPK2O43353 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.28■□□□□ 0.52
RIPK2O43353 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.28■□□□□ 0.52
RIPK2O43353 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.28■□□□□ 0.52
RIPK2O43353 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RIPK2O43353 FDX2-206ENST00000492239 773 ntTSL 2 BASIC18.28■□□□□ 0.52
RIPK2O43353 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.28■□□□□ 0.52
RIPK2O43353 C1QBPP2-201ENST00000528754 825 ntBASIC18.28■□□□□ 0.52
RIPK2O43353 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
RIPK2O43353 AC009065.1-201ENST00000564055 1225 ntBASIC18.28■□□□□ 0.52
RIPK2O43353 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
RIPK2O43353 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
RIPK2O43353 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
RIPK2O43353 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC18.28■□□□□ 0.52
RIPK2O43353 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.28■□□□□ 0.52
RIPK2O43353 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RIPK2O43353 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
RIPK2O43353 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
RIPK2O43353 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RIPK2O43353 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
RIPK2O43353 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RIPK2O43353 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC18.28■□□□□ 0.52
RIPK2O43353 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RIPK2O43353 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
RIPK2O43353 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.27■□□□□ 0.52
RIPK2O43353 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RIPK2O43353 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
RIPK2O43353 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.27■□□□□ 0.52
RIPK2O43353 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
RIPK2O43353 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RIPK2O43353 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.27■□□□□ 0.52
RIPK2O43353 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.27■□□□□ 0.52
RIPK2O43353 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RIPK2O43353 FAM197Y1-201ENST00000421178 764 ntBASIC18.27■□□□□ 0.52
RIPK2O43353 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RIPK2O43353 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
RIPK2O43353 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.27■□□□□ 0.52
RIPK2O43353 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
RIPK2O43353 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.27■□□□□ 0.52
RIPK2O43353 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.27■□□□□ 0.52
RIPK2O43353 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
RIPK2O43353 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RIPK2O43353 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.51
RIPK2O43353 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RIPK2O43353 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RIPK2O43353 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RIPK2O43353 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.51
RIPK2O43353 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC18.27■□□□□ 0.51
RIPK2O43353 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RIPK2O43353 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
RIPK2O43353 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
RIPK2O43353 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.26■□□□□ 0.51
RIPK2O43353 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
RIPK2O43353 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
RIPK2O43353 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RIPK2O43353 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RIPK2O43353 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
RIPK2O43353 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
RIPK2O43353 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
RIPK2O43353 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.26■□□□□ 0.51
RIPK2O43353 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms