Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
CCDC188H7C350 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC188H7C350 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.73■□□□□ 0.59
CCDC188H7C350 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
CCDC188H7C350 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC188H7C350 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC188H7C350 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC188H7C350 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC188H7C350 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC188H7C350 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC188H7C350 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC188H7C350 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC188H7C350 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC188H7C350 NUDT16P1-203ENST00000513809 620 ntBASIC18.73■□□□□ 0.59
CCDC188H7C350 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
CCDC188H7C350 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.73■□□□□ 0.59
CCDC188H7C350 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.73■□□□□ 0.59
CCDC188H7C350 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC188H7C350 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.73■□□□□ 0.59
CCDC188H7C350 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.73■□□□□ 0.59
CCDC188H7C350 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC188H7C350 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC188H7C350 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC188H7C350 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC188H7C350 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
CCDC188H7C350 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.73■□□□□ 0.59
CCDC188H7C350 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.73■□□□□ 0.59
CCDC188H7C350 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC188H7C350 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.73■□□□□ 0.59
CCDC188H7C350 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC18.73■□□□□ 0.59
CCDC188H7C350 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CCDC188H7C350 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC188H7C350 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC188H7C350 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CCDC188H7C350 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC188H7C350 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC188H7C350 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
CCDC188H7C350 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC188H7C350 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC188H7C350 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC188H7C350 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC188H7C350 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.72■□□□□ 0.59
CCDC188H7C350 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC188H7C350 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.72■□□□□ 0.59
CCDC188H7C350 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.72■□□□□ 0.59
CCDC188H7C350 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.72■□□□□ 0.59
CCDC188H7C350 CR769767.2-201ENST00000622735 460 ntBASIC18.72■□□□□ 0.59
CCDC188H7C350 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC188H7C350 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC188H7C350 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC188H7C350 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
CCDC188H7C350 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC188H7C350 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CCDC188H7C350 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
CCDC188H7C350 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.72■□□□□ 0.59
CCDC188H7C350 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CCDC188H7C350 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC188H7C350 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC188H7C350 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC188H7C350 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC188H7C350 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC188H7C350 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC188H7C350 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC188H7C350 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC188H7C350 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
CCDC188H7C350 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC188H7C350 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC188H7C350 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC188H7C350 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
CCDC188H7C350 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC188H7C350 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC188H7C350 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC18.71■□□□□ 0.59
CCDC188H7C350 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.71■□□□□ 0.59
CCDC188H7C350 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC188H7C350 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.71■□□□□ 0.59
CCDC188H7C350 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC188H7C350 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
CCDC188H7C350 LINC01451-201ENST00000623792 534 ntBASIC18.71■□□□□ 0.59
CCDC188H7C350 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC188H7C350 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.71■□□□□ 0.59
CCDC188H7C350 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC188H7C350 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC188H7C350 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC188H7C350 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CCDC188H7C350 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CCDC188H7C350 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CCDC188H7C350 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CCDC188H7C350 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC188H7C350 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC188H7C350 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC188H7C350 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC188H7C350 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC188H7C350 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC188H7C350 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC188H7C350 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC188H7C350 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC188H7C350 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC188H7C350 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
CCDC188H7C350 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC188H7C350 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms