Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 AC132938.6-201ENST00000623828 1655 ntBASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 TMA16-209ENST00000513272 803 ntTSL 2 BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 AC145285.6-201ENST00000604632 637 ntBASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HIF3AQ9Y2N7 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 PBK-203ENST00000522944 1499 ntTSL 2 BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
HIF3AQ9Y2N7 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 NME9-203ENST00000383180 2133 ntTSL 2 BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 AC012317.2-201ENST00000623305 2251 ntBASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 AL138966.2-201ENST00000621997 464 ntBASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 AL157888.1-201ENST00000631930 593 ntBASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 AC141257.4-201ENST00000634557 245 ntBASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 AC136944.6-201ENST00000634818 245 ntBASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HIF3AQ9Y2N7 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms