Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
AP4E1Q9UPM8 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 CLN6-214ENST00000636314 442 ntTSL 3 BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 KRT18P55-202ENST00000578578 1546 ntBASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
AP4E1Q9UPM8 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 MED25-212ENST00000618715 1467 ntTSL 5 BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 GPR32P1-201ENST00000601788 811 ntBASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.71■□□□□ 0.59
AP4E1Q9UPM8 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
AP4E1Q9UPM8 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 KRT18P65-201ENST00000439811 1286 ntBASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 AC067852.2-201ENST00000590513 2313 ntBASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 AC022898.2-201ENST00000616822 1312 ntBASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 AC100803.2-201ENST00000562459 1963 ntBASIC18.7■□□□□ 0.58
AP4E1Q9UPM8 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms