Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC13.54□□□□□ -0.24
LINC00477Q96M19 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00477Q96M19 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00477Q96M19 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
LINC00477Q96M19 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC13.54□□□□□ -0.24
LINC00477Q96M19 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00477Q96M19 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00477Q96M19 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC13.54□□□□□ -0.24
LINC00477Q96M19 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00477Q96M19 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00477Q96M19 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00477Q96M19 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC13.53□□□□□ -0.24
LINC00477Q96M19 SIRPAP1-201ENST00000448467 1770 ntBASIC13.53□□□□□ -0.24
LINC00477Q96M19 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00477Q96M19 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC13.53□□□□□ -0.24
LINC00477Q96M19 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00477Q96M19 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00477Q96M19 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC13.53□□□□□ -0.24
LINC00477Q96M19 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC13.53□□□□□ -0.24
LINC00477Q96M19 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00477Q96M19 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00477Q96M19 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00477Q96M19 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00477Q96M19 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC13.53□□□□□ -0.24
LINC00477Q96M19 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC13.53□□□□□ -0.24
LINC00477Q96M19 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00477Q96M19 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC13.53□□□□□ -0.24
LINC00477Q96M19 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00477Q96M19 AC128688.1-201ENST00000487626 519 ntBASIC13.53□□□□□ -0.24
LINC00477Q96M19 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
LINC00477Q96M19 DHDH-203ENST00000522614 776 ntTSL 5 BASIC13.53□□□□□ -0.24
LINC00477Q96M19 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC13.53□□□□□ -0.24
LINC00477Q96M19 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC13.53□□□□□ -0.24
LINC00477Q96M19 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
LINC00477Q96M19 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00477Q96M19 KRT17P2-201ENST00000300992 1314 ntBASIC13.53□□□□□ -0.24
LINC00477Q96M19 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00477Q96M19 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00477Q96M19 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00477Q96M19 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00477Q96M19 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
LINC00477Q96M19 AC099343.3-201ENST00000605834 2503 ntBASIC13.53□□□□□ -0.24
LINC00477Q96M19 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00477Q96M19 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00477Q96M19 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
LINC00477Q96M19 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00477Q96M19 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00477Q96M19 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00477Q96M19 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00477Q96M19 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC13.53□□□□□ -0.24
LINC00477Q96M19 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
LINC00477Q96M19 AL024508.2-201ENST00000607749 1894 ntBASIC13.53□□□□□ -0.24
LINC00477Q96M19 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
LINC00477Q96M19 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.24
LINC00477Q96M19 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
LINC00477Q96M19 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
LINC00477Q96M19 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
LINC00477Q96M19 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC13.52□□□□□ -0.24
LINC00477Q96M19 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.24
LINC00477Q96M19 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.24
LINC00477Q96M19 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC13.52□□□□□ -0.24
LINC00477Q96M19 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.24
LINC00477Q96M19 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC13.52□□□□□ -0.24
LINC00477Q96M19 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
LINC00477Q96M19 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
LINC00477Q96M19 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
LINC00477Q96M19 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
LINC00477Q96M19 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC13.52□□□□□ -0.24
LINC00477Q96M19 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
LINC00477Q96M19 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
LINC00477Q96M19 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC13.52□□□□□ -0.25
LINC00477Q96M19 PRR31-201ENST00000371629 978 ntTSL 2 BASIC13.52□□□□□ -0.25
LINC00477Q96M19 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC13.52□□□□□ -0.25
LINC00477Q96M19 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
LINC00477Q96M19 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
LINC00477Q96M19 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC13.52□□□□□ -0.25
LINC00477Q96M19 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC13.52□□□□□ -0.25
LINC00477Q96M19 USP36-216ENST00000589424 970 ntTSL 5 BASIC13.52□□□□□ -0.25
LINC00477Q96M19 AC010240.3-201ENST00000607688 395 ntBASIC13.52□□□□□ -0.25
LINC00477Q96M19 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC13.52□□□□□ -0.25
LINC00477Q96M19 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC13.52□□□□□ -0.25
LINC00477Q96M19 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC13.52□□□□□ -0.25
LINC00477Q96M19 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
LINC00477Q96M19 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
LINC00477Q96M19 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC13.52□□□□□ -0.25
LINC00477Q96M19 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC13.52□□□□□ -0.25
LINC00477Q96M19 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
LINC00477Q96M19 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
LINC00477Q96M19 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC13.52□□□□□ -0.25
LINC00477Q96M19 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
LINC00477Q96M19 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC13.52□□□□□ -0.25
LINC00477Q96M19 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC13.52□□□□□ -0.25
LINC00477Q96M19 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
LINC00477Q96M19 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00477Q96M19 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00477Q96M19 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00477Q96M19 AC012317.2-201ENST00000623305 2251 ntBASIC13.51□□□□□ -0.25
LINC00477Q96M19 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00477Q96M19 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
LINC00477Q96M19 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms