Protein–RNA interactions for Protein: Q96JG6

VPS50, Syndetin, humanhuman

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50Q96JG6 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS50Q96JG6 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS50Q96JG6 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS50Q96JG6 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS50Q96JG6 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS50Q96JG6 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS50Q96JG6 KRT8P45-201ENST00000414328 1447 ntBASIC17.67■□□□□ 0.42
VPS50Q96JG6 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS50Q96JG6 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS50Q96JG6 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS50Q96JG6 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS50Q96JG6 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS50Q96JG6 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.67■□□□□ 0.42
VPS50Q96JG6 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS50Q96JG6 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS50Q96JG6 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.67■□□□□ 0.42
VPS50Q96JG6 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS50Q96JG6 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS50Q96JG6 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS50Q96JG6 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS50Q96JG6 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS50Q96JG6 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VPS50Q96JG6 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS50Q96JG6 ESPNP-201ENST00000270691 2015 ntBASIC17.67■□□□□ 0.42
VPS50Q96JG6 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.67■□□□□ 0.42
VPS50Q96JG6 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
VPS50Q96JG6 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.67■□□□□ 0.42
VPS50Q96JG6 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
VPS50Q96JG6 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS50Q96JG6 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.67■□□□□ 0.42
VPS50Q96JG6 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
VPS50Q96JG6 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS50Q96JG6 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS50Q96JG6 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS50Q96JG6 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS50Q96JG6 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
VPS50Q96JG6 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS50Q96JG6 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS50Q96JG6 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VPS50Q96JG6 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS50Q96JG6 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.66■□□□□ 0.42
VPS50Q96JG6 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS50Q96JG6 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS50Q96JG6 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS50Q96JG6 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.66■□□□□ 0.42
VPS50Q96JG6 AC009947.2-201ENST00000444014 672 ntBASIC17.66■□□□□ 0.42
VPS50Q96JG6 AC034232.1-201ENST00000506026 1064 ntBASIC17.66■□□□□ 0.42
VPS50Q96JG6 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS50Q96JG6 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS50Q96JG6 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.66■□□□□ 0.42
VPS50Q96JG6 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS50Q96JG6 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS50Q96JG6 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS50Q96JG6 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS50Q96JG6 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS50Q96JG6 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.66■□□□□ 0.42
VPS50Q96JG6 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
VPS50Q96JG6 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.66■□□□□ 0.42
VPS50Q96JG6 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VPS50Q96JG6 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS50Q96JG6 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS50Q96JG6 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS50Q96JG6 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS50Q96JG6 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
VPS50Q96JG6 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS50Q96JG6 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS50Q96JG6 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS50Q96JG6 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS50Q96JG6 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.65■□□□□ 0.42
VPS50Q96JG6 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS50Q96JG6 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS50Q96JG6 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS50Q96JG6 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
VPS50Q96JG6 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS50Q96JG6 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
VPS50Q96JG6 AL121956.5-201ENST00000625261 221 ntBASIC17.65■□□□□ 0.42
VPS50Q96JG6 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS50Q96JG6 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.65■□□□□ 0.42
VPS50Q96JG6 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS50Q96JG6 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS50Q96JG6 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS50Q96JG6 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS50Q96JG6 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS50Q96JG6 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
VPS50Q96JG6 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS50Q96JG6 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS50Q96JG6 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VPS50Q96JG6 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VPS50Q96JG6 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.42
VPS50Q96JG6 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
VPS50Q96JG6 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
VPS50Q96JG6 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
VPS50Q96JG6 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
VPS50Q96JG6 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS50Q96JG6 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS50Q96JG6 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS50Q96JG6 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS50Q96JG6 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS50Q96JG6 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS50Q96JG6 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 52 ms