Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC4Q92889 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC4Q92889 AC093010.1-201ENST00000473625 1624 ntBASIC20.47■□□□□ 0.87
ERCC4Q92889 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC4Q92889 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC4Q92889 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC4Q92889 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC4Q92889 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC4Q92889 AP001412.1-201ENST00000608405 714 ntBASIC20.47■□□□□ 0.87
ERCC4Q92889 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
ERCC4Q92889 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC20.47■□□□□ 0.87
ERCC4Q92889 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC4Q92889 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC4Q92889 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC20.47■□□□□ 0.87
ERCC4Q92889 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC20.47■□□□□ 0.87
ERCC4Q92889 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC4Q92889 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC20.47■□□□□ 0.87
ERCC4Q92889 AL024508.2-201ENST00000607749 1894 ntBASIC20.47■□□□□ 0.87
ERCC4Q92889 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC20.47■□□□□ 0.87
ERCC4Q92889 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC20.47■□□□□ 0.87
ERCC4Q92889 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC4Q92889 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC4Q92889 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC4Q92889 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC4Q92889 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC4Q92889 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC4Q92889 AC092338.2-201ENST00000568827 1415 ntBASIC20.46■□□□□ 0.87
ERCC4Q92889 HOXB1-202ENST00000577092 1414 ntBASIC20.46■□□□□ 0.87
ERCC4Q92889 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC20.46■□□□□ 0.87
ERCC4Q92889 ILF2-202ENST00000368681 726 ntTSL 2 BASIC20.46■□□□□ 0.87
ERCC4Q92889 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC4Q92889 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC4Q92889 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC4Q92889 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC4Q92889 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.46■□□□□ 0.87
ERCC4Q92889 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC4Q92889 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC4Q92889 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC4Q92889 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC20.46■□□□□ 0.87
ERCC4Q92889 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC20.46■□□□□ 0.87
ERCC4Q92889 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC4Q92889 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC4Q92889 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC4Q92889 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC4Q92889 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC20.46■□□□□ 0.87
ERCC4Q92889 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC4Q92889 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC20.46■□□□□ 0.87
ERCC4Q92889 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
ERCC4Q92889 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC4Q92889 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
ERCC4Q92889 AC009053.2-201ENST00000563701 2365 ntBASIC20.45■□□□□ 0.86
ERCC4Q92889 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC4Q92889 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC4Q92889 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC20.45■□□□□ 0.86
ERCC4Q92889 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC4Q92889 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC4Q92889 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.45■□□□□ 0.86
ERCC4Q92889 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC4Q92889 AC100803.2-201ENST00000562459 1963 ntBASIC20.45■□□□□ 0.86
ERCC4Q92889 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.45■□□□□ 0.86
ERCC4Q92889 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC4Q92889 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC4Q92889 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
ERCC4Q92889 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC20.45■□□□□ 0.86
ERCC4Q92889 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.45■□□□□ 0.86
ERCC4Q92889 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC4Q92889 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC20.45■□□□□ 0.86
ERCC4Q92889 TSPY15P-201ENST00000457163 923 ntBASIC20.45■□□□□ 0.86
ERCC4Q92889 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.45■□□□□ 0.86
ERCC4Q92889 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
ERCC4Q92889 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC20.45■□□□□ 0.86
ERCC4Q92889 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
ERCC4Q92889 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC4Q92889 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC4Q92889 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC4Q92889 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC4Q92889 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC4Q92889 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.45■□□□□ 0.86
ERCC4Q92889 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC4Q92889 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
ERCC4Q92889 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC20.45■□□□□ 0.86
ERCC4Q92889 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC20.44■□□□□ 0.86
ERCC4Q92889 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
ERCC4Q92889 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.44■□□□□ 0.86
ERCC4Q92889 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.44■□□□□ 0.86
ERCC4Q92889 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC4Q92889 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC4Q92889 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC4Q92889 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC4Q92889 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC4Q92889 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC4Q92889 UNC93B2-201ENST00000285383 730 ntBASIC20.44■□□□□ 0.86
ERCC4Q92889 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC4Q92889 MIR1238-201ENST00000408483 83 ntBASIC20.44■□□□□ 0.86
ERCC4Q92889 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.44■□□□□ 0.86
ERCC4Q92889 AC066615.1-201ENST00000640911 628 ntBASIC20.44■□□□□ 0.86
ERCC4Q92889 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
ERCC4Q92889 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC4Q92889 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC4Q92889 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms