Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC20.64■□□□□ 0.9
SH3RF1Q7Z6J0 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SH3RF1Q7Z6J0 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
SH3RF1Q7Z6J0 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SH3RF1Q7Z6J0 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.64■□□□□ 0.9
SH3RF1Q7Z6J0 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 AC067852.2-201ENST00000590513 2313 ntBASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 SAPCD2P3-201ENST00000455031 850 ntBASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 PPIE-208ENST00000470213 927 ntTSL 3 BASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 FICD-205ENST00000552758 603 ntTSL 2 BASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 AP001005.1-201ENST00000571755 1248 ntBASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 NAT14-202ENST00000587400 416 ntTSL 5 BASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 REXO1L6P-202ENST00000619970 1078 ntBASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 GATB-213ENST00000515812 1893 ntTSL 5 BASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SH3RF1Q7Z6J0 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 UROS-202ENST00000368778 1556 ntTSL 2 BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 AC138028.4-201ENST00000564984 1845 ntBASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 LSM5-204ENST00000409909 740 ntTSL 2 BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 AC092183.1-201ENST00000469884 875 ntBASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 AP003733.1-201ENST00000491725 852 ntBASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC20.63■□□□□ 0.89
SH3RF1Q7Z6J0 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
SH3RF1Q7Z6J0 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC20.62■□□□□ 0.89
SH3RF1Q7Z6J0 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC20.62■□□□□ 0.89
SH3RF1Q7Z6J0 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SH3RF1Q7Z6J0 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
SH3RF1Q7Z6J0 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC20.62■□□□□ 0.89
SH3RF1Q7Z6J0 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SH3RF1Q7Z6J0 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC20.62■□□□□ 0.89
SH3RF1Q7Z6J0 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC20.62■□□□□ 0.89
SH3RF1Q7Z6J0 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
SH3RF1Q7Z6J0 Z69720.1-201ENST00000601483 472 ntBASIC20.62■□□□□ 0.89
SH3RF1Q7Z6J0 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
SH3RF1Q7Z6J0 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SH3RF1Q7Z6J0 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SH3RF1Q7Z6J0 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SH3RF1Q7Z6J0 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
SH3RF1Q7Z6J0 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SH3RF1Q7Z6J0 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC20.62■□□□□ 0.89
SH3RF1Q7Z6J0 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC20.62■□□□□ 0.89
SH3RF1Q7Z6J0 PHGDH-209ENST00000641074 1780 ntBASIC20.62■□□□□ 0.89
SH3RF1Q7Z6J0 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SH3RF1Q7Z6J0 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC20.61■□□□□ 0.89
SH3RF1Q7Z6J0 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SH3RF1Q7Z6J0 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC20.61■□□□□ 0.89
SH3RF1Q7Z6J0 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
SH3RF1Q7Z6J0 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SH3RF1Q7Z6J0 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SH3RF1Q7Z6J0 GMCL1P1-201ENST00000463439 1581 ntBASIC20.61■□□□□ 0.89
SH3RF1Q7Z6J0 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC20.61■□□□□ 0.89
SH3RF1Q7Z6J0 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SH3RF1Q7Z6J0 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SH3RF1Q7Z6J0 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC20.61■□□□□ 0.89
SH3RF1Q7Z6J0 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC20.61■□□□□ 0.89
SH3RF1Q7Z6J0 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
SH3RF1Q7Z6J0 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC20.61■□□□□ 0.89
SH3RF1Q7Z6J0 AC092865.5-201ENST00000545435 363 ntBASIC20.61■□□□□ 0.89
SH3RF1Q7Z6J0 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC20.61■□□□□ 0.89
SH3RF1Q7Z6J0 REXO1L9P-201ENST00000604264 2108 ntBASIC20.61■□□□□ 0.89
SH3RF1Q7Z6J0 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC20.61■□□□□ 0.89
SH3RF1Q7Z6J0 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
SH3RF1Q7Z6J0 ABBA01031661.1-201ENST00000634362 1253 ntBASIC20.61■□□□□ 0.89
SH3RF1Q7Z6J0 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms