Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC19.22■□□□□ 0.67
SOX4Q06945 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC19.22■□□□□ 0.67
SOX4Q06945 AC008608.2-201ENST00000606089 416 ntBASIC19.22■□□□□ 0.67
SOX4Q06945 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.22■□□□□ 0.67
SOX4Q06945 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SOX4Q06945 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SOX4Q06945 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.22■□□□□ 0.67
SOX4Q06945 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SOX4Q06945 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SOX4Q06945 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
SOX4Q06945 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
SOX4Q06945 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX4Q06945 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC19.21■□□□□ 0.67
SOX4Q06945 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC19.21■□□□□ 0.67
SOX4Q06945 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC19.21■□□□□ 0.67
SOX4Q06945 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SOX4Q06945 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SOX4Q06945 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX4Q06945 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.21■□□□□ 0.67
SOX4Q06945 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX4Q06945 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SOX4Q06945 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC19.21■□□□□ 0.67
SOX4Q06945 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC19.21■□□□□ 0.67
SOX4Q06945 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX4Q06945 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
SOX4Q06945 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX4Q06945 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX4Q06945 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC19.21■□□□□ 0.67
SOX4Q06945 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC19.21■□□□□ 0.67
SOX4Q06945 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
SOX4Q06945 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.21■□□□□ 0.67
SOX4Q06945 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SOX4Q06945 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SOX4Q06945 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC19.21■□□□□ 0.67
SOX4Q06945 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SOX4Q06945 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX4Q06945 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.21■□□□□ 0.67
SOX4Q06945 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.21■□□□□ 0.67
SOX4Q06945 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
SOX4Q06945 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX4Q06945 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC19.21■□□□□ 0.67
SOX4Q06945 AC097374.2-201ENST00000618617 1306 ntBASIC19.21■□□□□ 0.67
SOX4Q06945 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX4Q06945 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.21■□□□□ 0.67
SOX4Q06945 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX4Q06945 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
SOX4Q06945 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SOX4Q06945 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SOX4Q06945 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.2■□□□□ 0.66
SOX4Q06945 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SOX4Q06945 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
SOX4Q06945 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19.2■□□□□ 0.66
SOX4Q06945 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SOX4Q06945 AC096633.1-201ENST00000422446 749 ntBASIC19.2■□□□□ 0.66
SOX4Q06945 RBSN-204ENST00000449050 903 ntTSL 2 BASIC19.2■□□□□ 0.66
SOX4Q06945 FGFR3P6-201ENST00000457012 610 ntBASIC19.2■□□□□ 0.66
SOX4Q06945 COX5A-204ENST00000567270 579 ntTSL 3 BASIC19.2■□□□□ 0.66
SOX4Q06945 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SOX4Q06945 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SOX4Q06945 AL355877.3-201ENST00000622820 899 ntBASIC19.2■□□□□ 0.66
SOX4Q06945 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
SOX4Q06945 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
SOX4Q06945 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
SOX4Q06945 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SOX4Q06945 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SOX4Q06945 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC19.2■□□□□ 0.66
SOX4Q06945 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SOX4Q06945 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC19.2■□□□□ 0.66
SOX4Q06945 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.2■□□□□ 0.66
SOX4Q06945 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SOX4Q06945 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX4Q06945 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC19.19■□□□□ 0.66
SOX4Q06945 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX4Q06945 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX4Q06945 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC19.19■□□□□ 0.66
SOX4Q06945 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC19.19■□□□□ 0.66
SOX4Q06945 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX4Q06945 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX4Q06945 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX4Q06945 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX4Q06945 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX4Q06945 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SOX4Q06945 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.19■□□□□ 0.66
SOX4Q06945 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC19.19■□□□□ 0.66
SOX4Q06945 AC148477.8-201ENST00000624298 468 ntBASIC19.19■□□□□ 0.66
SOX4Q06945 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SOX4Q06945 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX4Q06945 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.19■□□□□ 0.66
SOX4Q06945 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX4Q06945 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX4Q06945 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SOX4Q06945 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SOX4Q06945 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SOX4Q06945 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SOX4Q06945 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
SOX4Q06945 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
SOX4Q06945 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC19.18■□□□□ 0.66
SOX4Q06945 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SOX4Q06945 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SOX4Q06945 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms