Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.23■□□□□ 0.83
TPM4P67936 MIR3180-5-201ENST00000583743 153 ntBASIC20.23■□□□□ 0.83
TPM4P67936 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.23■□□□□ 0.83
TPM4P67936 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
TPM4P67936 AC073195.1-201ENST00000607241 877 ntBASIC20.23■□□□□ 0.83
TPM4P67936 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TPM4P67936 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TPM4P67936 TNRC18P3-201ENST00000441896 2691 ntBASIC20.23■□□□□ 0.83
TPM4P67936 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TPM4P67936 SP100-208ENST00000427101 1922 ntTSL 2 BASIC20.23■□□□□ 0.83
TPM4P67936 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
TPM4P67936 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
TPM4P67936 FSCN1P1-201ENST00000568912 1481 ntBASIC20.23■□□□□ 0.83
TPM4P67936 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
TPM4P67936 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC20.23■□□□□ 0.83
TPM4P67936 CYP51A1P1-201ENST00000492267 1507 ntBASIC20.22■□□□□ 0.83
TPM4P67936 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TPM4P67936 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
TPM4P67936 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20.22■□□□□ 0.83
TPM4P67936 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
TPM4P67936 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
TPM4P67936 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TPM4P67936 AC011506.1-201ENST00000474329 610 ntBASIC20.22■□□□□ 0.83
TPM4P67936 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.22■□□□□ 0.83
TPM4P67936 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.22■□□□□ 0.83
TPM4P67936 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TPM4P67936 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.22■□□□□ 0.83
TPM4P67936 AP000692.2-201ENST00000608391 879 ntBASIC20.22■□□□□ 0.83
TPM4P67936 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TPM4P67936 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
TPM4P67936 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TPM4P67936 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TPM4P67936 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
TPM4P67936 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TPM4P67936 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
TPM4P67936 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TPM4P67936 OVCH1-AS1-204ENST00000641955 5529 ntBASIC20.22■□□□□ 0.83
TPM4P67936 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TPM4P67936 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
TPM4P67936 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
TPM4P67936 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TPM4P67936 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.21■□□□□ 0.83
TPM4P67936 UROS-202ENST00000368778 1556 ntTSL 2 BASIC20.21■□□□□ 0.83
TPM4P67936 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC20.21■□□□□ 0.83
TPM4P67936 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.21■□□□□ 0.83
TPM4P67936 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TPM4P67936 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TPM4P67936 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TPM4P67936 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.21■□□□□ 0.83
TPM4P67936 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
TPM4P67936 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.21■□□□□ 0.83
TPM4P67936 AC009065.1-201ENST00000564055 1225 ntBASIC20.21■□□□□ 0.83
TPM4P67936 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TPM4P67936 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TPM4P67936 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
TPM4P67936 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC20.21■□□□□ 0.83
TPM4P67936 PCDHA12-202ENST00000613593 2588 ntBASIC20.21■□□□□ 0.83
TPM4P67936 AC124067.4-201ENST00000519691 2379 ntBASIC20.21■□□□□ 0.83
TPM4P67936 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TPM4P67936 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
TPM4P67936 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TPM4P67936 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TPM4P67936 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TPM4P67936 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TPM4P67936 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
TPM4P67936 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC20.2■□□□□ 0.82
TPM4P67936 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TPM4P67936 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.2■□□□□ 0.82
TPM4P67936 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
TPM4P67936 KIRREL3-AS3-201ENST00000404882 831 ntBASIC20.2■□□□□ 0.82
TPM4P67936 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.2■□□□□ 0.82
TPM4P67936 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.2■□□□□ 0.82
TPM4P67936 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.2■□□□□ 0.82
TPM4P67936 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC20.2■□□□□ 0.82
TPM4P67936 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TPM4P67936 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TPM4P67936 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
TPM4P67936 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TPM4P67936 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
TPM4P67936 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
TPM4P67936 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC20.2■□□□□ 0.82
TPM4P67936 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC20.2■□□□□ 0.82
TPM4P67936 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
TPM4P67936 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
TPM4P67936 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
TPM4P67936 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM4P67936 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TPM4P67936 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC20.19■□□□□ 0.82
TPM4P67936 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM4P67936 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
TPM4P67936 PP12613-201ENST00000424958 2230 ntBASIC20.19■□□□□ 0.82
TPM4P67936 AC099343.3-201ENST00000605834 2503 ntBASIC20.19■□□□□ 0.82
TPM4P67936 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM4P67936 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TPM4P67936 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM4P67936 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TPM4P67936 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM4P67936 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM4P67936 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TPM4P67936 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms