Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 LINC00602-201ENST00000629776 2065 ntBASIC18.78■□□□□ 0.6
CDH6P55285 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
CDH6P55285 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CDH6P55285 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH6P55285 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDH6P55285 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.78■□□□□ 0.6
CDH6P55285 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.77■□□□□ 0.6
CDH6P55285 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.77■□□□□ 0.6
CDH6P55285 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH6P55285 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDH6P55285 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.77■□□□□ 0.6
CDH6P55285 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDH6P55285 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH6P55285 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH6P55285 LINC00167-201ENST00000530583 1419 ntBASIC18.77■□□□□ 0.6
CDH6P55285 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH6P55285 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH6P55285 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH6P55285 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CDH6P55285 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH6P55285 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDH6P55285 RCN1P1-201ENST00000400413 996 ntBASIC18.77■□□□□ 0.6
CDH6P55285 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC18.77■□□□□ 0.6
CDH6P55285 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.77■□□□□ 0.6
CDH6P55285 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.77■□□□□ 0.6
CDH6P55285 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.77■□□□□ 0.6
CDH6P55285 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH6P55285 KRT18P55-202ENST00000578578 1546 ntBASIC18.77■□□□□ 0.6
CDH6P55285 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH6P55285 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDH6P55285 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH6P55285 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDH6P55285 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDH6P55285 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CDH6P55285 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDH6P55285 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
CDH6P55285 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
CDH6P55285 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC18.77■□□□□ 0.59
CDH6P55285 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.77■□□□□ 0.59
CDH6P55285 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
CDH6P55285 LETM1P2-201ENST00000597330 2178 ntBASIC18.76■□□□□ 0.59
CDH6P55285 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.76■□□□□ 0.59
CDH6P55285 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC18.76■□□□□ 0.59
CDH6P55285 AC012317.2-201ENST00000623305 2251 ntBASIC18.76■□□□□ 0.59
CDH6P55285 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH6P55285 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CDH6P55285 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH6P55285 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDH6P55285 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.76■□□□□ 0.59
CDH6P55285 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
CDH6P55285 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDH6P55285 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDH6P55285 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.76■□□□□ 0.59
CDH6P55285 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.76■□□□□ 0.59
CDH6P55285 DUTP2-201ENST00000519164 463 ntBASIC18.76■□□□□ 0.59
CDH6P55285 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDH6P55285 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC18.76■□□□□ 0.59
CDH6P55285 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.76■□□□□ 0.59
CDH6P55285 TK1-205ENST00000590862 642 ntTSL 3 BASIC18.76■□□□□ 0.59
CDH6P55285 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.76■□□□□ 0.59
CDH6P55285 AC006011.2-201ENST00000621313 1158 ntBASIC18.76■□□□□ 0.59
CDH6P55285 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.76■□□□□ 0.59
CDH6P55285 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH6P55285 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.76■□□□□ 0.59
CDH6P55285 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH6P55285 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH6P55285 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH6P55285 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.76■□□□□ 0.59
CDH6P55285 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH6P55285 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.76■□□□□ 0.59
CDH6P55285 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
CDH6P55285 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH6P55285 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
CDH6P55285 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDH6P55285 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CDH6P55285 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CDH6P55285 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.75■□□□□ 0.59
CDH6P55285 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.75■□□□□ 0.59
CDH6P55285 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
CDH6P55285 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CDH6P55285 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDH6P55285 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDH6P55285 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
CDH6P55285 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
CDH6P55285 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDH6P55285 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CDH6P55285 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CDH6P55285 OR6D1P-202ENST00000641007 5290 ntBASIC18.75■□□□□ 0.59
CDH6P55285 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDH6P55285 RNF152P1-201ENST00000397754 604 ntBASIC18.75■□□□□ 0.59
CDH6P55285 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDH6P55285 TSPY5P-201ENST00000426936 936 ntBASIC18.75■□□□□ 0.59
CDH6P55285 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.75■□□□□ 0.59
CDH6P55285 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.75■□□□□ 0.59
CDH6P55285 RN7SL850P-201ENST00000579959 291 ntBASIC18.75■□□□□ 0.59
CDH6P55285 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.75■□□□□ 0.59
CDH6P55285 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CDH6P55285 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.75■□□□□ 0.59
CDH6P55285 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
CDH6P55285 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms