Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC25.64■■□□□ 1.7
CLTCL1P53675 UPF3AP3-201ENST00000420996 769 ntBASIC25.64■■□□□ 1.7
CLTCL1P53675 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC25.64■■□□□ 1.7
CLTCL1P53675 AC136632.2-201ENST00000512891 861 ntBASIC25.64■■□□□ 1.7
CLTCL1P53675 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
CLTCL1P53675 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC25.64■■□□□ 1.7
CLTCL1P53675 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC25.64■■□□□ 1.7
CLTCL1P53675 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC25.64■■□□□ 1.7
CLTCL1P53675 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
CLTCL1P53675 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
CLTCL1P53675 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC25.64■■□□□ 1.69
CLTCL1P53675 FUT8-AS1-201ENST00000621019 1521 ntBASIC25.64■■□□□ 1.69
CLTCL1P53675 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
CLTCL1P53675 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC25.63■■□□□ 1.69
CLTCL1P53675 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CLTCL1P53675 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC25.63■■□□□ 1.69
CLTCL1P53675 IMP4-203ENST00000409935 958 ntTSL 5 BASIC25.63■■□□□ 1.69
CLTCL1P53675 AC004832.2-201ENST00000426397 482 ntBASIC25.63■■□□□ 1.69
CLTCL1P53675 PON3-205ENST00000451904 1053 ntTSL 3 BASIC25.63■■□□□ 1.69
CLTCL1P53675 AC092183.1-201ENST00000469884 875 ntBASIC25.63■■□□□ 1.69
CLTCL1P53675 ALG1L5P-201ENST00000482043 771 ntBASIC25.63■■□□□ 1.69
CLTCL1P53675 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC25.63■■□□□ 1.69
CLTCL1P53675 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC25.63■■□□□ 1.69
CLTCL1P53675 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC25.63■■□□□ 1.69
CLTCL1P53675 POR-209ENST00000439269 1858 ntTSL 2 BASIC25.63■■□□□ 1.69
CLTCL1P53675 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC25.63■■□□□ 1.69
CLTCL1P53675 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CLTCL1P53675 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
CLTCL1P53675 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC25.63■■□□□ 1.69
CLTCL1P53675 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
CLTCL1P53675 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC25.63■■□□□ 1.69
CLTCL1P53675 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC25.63■■□□□ 1.69
CLTCL1P53675 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC25.63■■□□□ 1.69
CLTCL1P53675 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC25.63■■□□□ 1.69
CLTCL1P53675 COPE-211ENST00000600932 1144 ntTSL 5 BASIC25.63■■□□□ 1.69
CLTCL1P53675 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC25.63■■□□□ 1.69
CLTCL1P53675 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
CLTCL1P53675 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC25.62■■□□□ 1.69
CLTCL1P53675 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CLTCL1P53675 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CLTCL1P53675 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC25.62■■□□□ 1.69
CLTCL1P53675 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CLTCL1P53675 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CLTCL1P53675 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC25.62■■□□□ 1.69
CLTCL1P53675 AC108073.2-201ENST00000464002 357 ntBASIC25.62■■□□□ 1.69
CLTCL1P53675 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CLTCL1P53675 AC064836.3-201ENST00000607928 673 ntBASIC25.62■■□□□ 1.69
CLTCL1P53675 MIR1199-201ENST00000621445 119 ntBASIC25.62■■□□□ 1.69
CLTCL1P53675 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
CLTCL1P53675 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
CLTCL1P53675 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC25.61■■□□□ 1.69
CLTCL1P53675 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CLTCL1P53675 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CLTCL1P53675 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC25.61■■□□□ 1.69
CLTCL1P53675 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CLTCL1P53675 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CLTCL1P53675 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CLTCL1P53675 AC005104.2-201ENST00000427818 678 ntBASIC25.61■■□□□ 1.69
CLTCL1P53675 NCF1C-201ENST00000438382 1427 ntBASIC25.61■■□□□ 1.69
CLTCL1P53675 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC25.61■■□□□ 1.69
CLTCL1P53675 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
CLTCL1P53675 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC25.61■■□□□ 1.69
CLTCL1P53675 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
CLTCL1P53675 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC25.61■■□□□ 1.69
CLTCL1P53675 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
CLTCL1P53675 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC25.61■■□□□ 1.69
CLTCL1P53675 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC25.61■■□□□ 1.69
CLTCL1P53675 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
CLTCL1P53675 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CLTCL1P53675 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CLTCL1P53675 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC25.6■■□□□ 1.69
CLTCL1P53675 AL049757.1-201ENST00000616842 1596 ntBASIC25.6■■□□□ 1.69
CLTCL1P53675 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CLTCL1P53675 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC25.6■■□□□ 1.69
CLTCL1P53675 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC25.6■■□□□ 1.69
CLTCL1P53675 FIS1-203ENST00000442303 631 ntTSL 3 BASIC25.6■■□□□ 1.69
CLTCL1P53675 RNA5SP416-201ENST00000516838 111 ntBASIC25.6■■□□□ 1.69
CLTCL1P53675 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC25.6■■□□□ 1.69
CLTCL1P53675 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC25.6■■□□□ 1.69
CLTCL1P53675 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC25.6■■□□□ 1.69
CLTCL1P53675 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CLTCL1P53675 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CLTCL1P53675 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC25.6■■□□□ 1.69
CLTCL1P53675 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
CLTCL1P53675 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CLTCL1P53675 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CLTCL1P53675 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
CLTCL1P53675 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CLTCL1P53675 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC25.59■■□□□ 1.69
CLTCL1P53675 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CLTCL1P53675 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC25.59■■□□□ 1.69
CLTCL1P53675 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CLTCL1P53675 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC25.59■■□□□ 1.69
CLTCL1P53675 AL139424.1-201ENST00000607572 797 ntBASIC25.59■■□□□ 1.69
CLTCL1P53675 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC25.59■■□□□ 1.69
CLTCL1P53675 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC25.59■■□□□ 1.69
CLTCL1P53675 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CLTCL1P53675 AC006504.4-201ENST00000592118 1568 ntBASIC25.59■■□□□ 1.69
CLTCL1P53675 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC25.59■■□□□ 1.69
CLTCL1P53675 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC25.59■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms