Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
MSH6P52701 CBR1-202ENST00000399191 838 ntTSL 3 BASIC24.82■■□□□ 1.56
MSH6P52701 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC24.82■■□□□ 1.56
MSH6P52701 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC24.82■■□□□ 1.56
MSH6P52701 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC24.82■■□□□ 1.56
MSH6P52701 CIPC-205ENST00000555437 566 ntTSL 3 BASIC24.82■■□□□ 1.56
MSH6P52701 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC24.82■■□□□ 1.56
MSH6P52701 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC24.82■■□□□ 1.56
MSH6P52701 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC24.82■■□□□ 1.56
MSH6P52701 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
MSH6P52701 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
MSH6P52701 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC24.82■■□□□ 1.56
MSH6P52701 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC24.82■■□□□ 1.56
MSH6P52701 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
MSH6P52701 AC063926.2-201ENST00000623766 1308 ntBASIC24.81■■□□□ 1.56
MSH6P52701 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
MSH6P52701 AC004461.1-201ENST00000412461 403 ntBASIC24.81■■□□□ 1.56
MSH6P52701 AC015922.1-201ENST00000421102 1152 ntBASIC24.81■■□□□ 1.56
MSH6P52701 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
MSH6P52701 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC24.81■■□□□ 1.56
MSH6P52701 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC24.81■■□□□ 1.56
MSH6P52701 AC091812.2-201ENST00000619081 385 ntBASIC24.81■■□□□ 1.56
MSH6P52701 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
MSH6P52701 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC24.81■■□□□ 1.56
MSH6P52701 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC24.81■■□□□ 1.56
MSH6P52701 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
MSH6P52701 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
MSH6P52701 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
MSH6P52701 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
MSH6P52701 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC24.81■■□□□ 1.56
MSH6P52701 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC24.81■■□□□ 1.56
MSH6P52701 NCF1C-201ENST00000438382 1427 ntBASIC24.81■■□□□ 1.56
MSH6P52701 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
MSH6P52701 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC24.81■■□□□ 1.56
MSH6P52701 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC24.81■■□□□ 1.56
MSH6P52701 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC24.8■■□□□ 1.56
MSH6P52701 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
MSH6P52701 AC109322.1-201ENST00000524499 1264 ntBASIC24.8■■□□□ 1.56
MSH6P52701 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC24.8■■□□□ 1.56
MSH6P52701 AC012645.4-201ENST00000610691 1061 ntBASIC24.8■■□□□ 1.56
MSH6P52701 AC073592.5-201ENST00000624854 528 ntBASIC24.8■■□□□ 1.56
MSH6P52701 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
MSH6P52701 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
MSH6P52701 ADM-208ENST00000534464 1640 ntTSL 2 BASIC24.8■■□□□ 1.56
MSH6P52701 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
MSH6P52701 PC-214ENST00000628663 1470 ntTSL 5 BASIC24.8■■□□□ 1.56
MSH6P52701 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
MSH6P52701 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC24.8■■□□□ 1.56
MSH6P52701 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
MSH6P52701 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC24.8■■□□□ 1.56
MSH6P52701 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
MSH6P52701 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
MSH6P52701 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC24.8■■□□□ 1.56
MSH6P52701 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
MSH6P52701 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC24.8■■□□□ 1.56
MSH6P52701 DDT-204ENST00000404092 805 ntTSL 3 BASIC24.8■■□□□ 1.56
MSH6P52701 FAM86GP-201ENST00000448322 971 ntBASIC24.8■■□□□ 1.56
MSH6P52701 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC24.8■■□□□ 1.56
MSH6P52701 DAD1-205ENST00000543337 501 ntTSL 3 BASIC24.8■■□□□ 1.56
MSH6P52701 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC24.8■■□□□ 1.56
MSH6P52701 AC096734.2-201ENST00000562054 433 ntBASIC24.8■■□□□ 1.56
MSH6P52701 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC24.8■■□□□ 1.56
MSH6P52701 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC24.8■■□□□ 1.56
MSH6P52701 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC24.79■■□□□ 1.56
MSH6P52701 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC24.79■■□□□ 1.56
MSH6P52701 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC24.79■■□□□ 1.56
MSH6P52701 POLI-202ENST00000406285 2030 ntTSL 2 BASIC24.79■■□□□ 1.56
MSH6P52701 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
MSH6P52701 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC24.79■■□□□ 1.56
MSH6P52701 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC24.79■■□□□ 1.56
MSH6P52701 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC24.79■■□□□ 1.56
MSH6P52701 HLA-DRB6-201ENST00000411500 1235 ntBASIC24.79■■□□□ 1.56
MSH6P52701 PMS2P4-201ENST00000412466 1052 ntBASIC24.79■■□□□ 1.56
MSH6P52701 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC24.79■■□□□ 1.56
MSH6P52701 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC24.79■■□□□ 1.56
MSH6P52701 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC24.79■■□□□ 1.56
MSH6P52701 DUT-210ENST00000559935 569 ntTSL 3 BASIC24.79■■□□□ 1.56
MSH6P52701 AQP6-205ENST00000618286 829 ntTSL 5 BASIC24.79■■□□□ 1.56
MSH6P52701 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC24.79■■□□□ 1.56
MSH6P52701 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC24.78■■□□□ 1.56
MSH6P52701 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC24.78■■□□□ 1.56
MSH6P52701 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
MSH6P52701 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
MSH6P52701 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
MSH6P52701 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC24.78■■□□□ 1.56
MSH6P52701 MRPL20P1-201ENST00000400819 433 ntBASIC24.78■■□□□ 1.56
MSH6P52701 AL020989.1-201ENST00000422979 469 ntBASIC24.78■■□□□ 1.56
MSH6P52701 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC24.78■■□□□ 1.56
MSH6P52701 AC023141.5-201ENST00000458585 616 ntBASIC24.78■■□□□ 1.56
MSH6P52701 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC24.78■■□□□ 1.56
MSH6P52701 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC24.78■■□□□ 1.56
MSH6P52701 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
MSH6P52701 AC010460.3-201ENST00000511359 1579 ntBASIC24.77■■□□□ 1.56
MSH6P52701 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
MSH6P52701 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
MSH6P52701 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
MSH6P52701 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC24.77■■□□□ 1.56
MSH6P52701 AC096633.1-201ENST00000422446 749 ntBASIC24.77■■□□□ 1.56
MSH6P52701 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC24.77■■□□□ 1.56
MSH6P52701 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC24.77■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms