Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 KRT16P4-201ENST00000453883 522 ntBASIC20.66■□□□□ 0.9
SMARCA1P28370 MINOS1P3-201ENST00000457048 203 ntBASIC20.66■□□□□ 0.9
SMARCA1P28370 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCA1P28370 FICD-205ENST00000552758 603 ntTSL 2 BASIC20.66■□□□□ 0.9
SMARCA1P28370 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC20.66■□□□□ 0.9
SMARCA1P28370 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCA1P28370 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
SMARCA1P28370 MED29-202ENST00000594368 1471 ntTSL 2 BASIC20.66■□□□□ 0.9
SMARCA1P28370 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCA1P28370 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20.66■□□□□ 0.9
SMARCA1P28370 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
SMARCA1P28370 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCA1P28370 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC20.66■□□□□ 0.9
SMARCA1P28370 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC20.66■□□□□ 0.9
SMARCA1P28370 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
SMARCA1P28370 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCA1P28370 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC20.66■□□□□ 0.9
SMARCA1P28370 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCA1P28370 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCA1P28370 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SMARCA1P28370 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
SMARCA1P28370 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.65■□□□□ 0.9
SMARCA1P28370 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCA1P28370 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCA1P28370 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCA1P28370 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC20.65■□□□□ 0.9
SMARCA1P28370 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
SMARCA1P28370 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCA1P28370 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCA1P28370 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
SMARCA1P28370 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCA1P28370 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC20.65■□□□□ 0.9
SMARCA1P28370 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCA1P28370 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCA1P28370 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCA1P28370 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCA1P28370 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC20.65■□□□□ 0.9
SMARCA1P28370 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCA1P28370 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC20.65■□□□□ 0.9
SMARCA1P28370 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.65■□□□□ 0.9
SMARCA1P28370 TOLLIP-AS1-201ENST00000530897 939 ntBASIC20.65■□□□□ 0.9
SMARCA1P28370 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC20.65■□□□□ 0.9
SMARCA1P28370 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC20.65■□□□□ 0.9
SMARCA1P28370 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC20.65■□□□□ 0.9
SMARCA1P28370 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCA1P28370 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCA1P28370 AL390961.4-201ENST00000623958 2535 ntBASIC20.65■□□□□ 0.9
SMARCA1P28370 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCA1P28370 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCA1P28370 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCA1P28370 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
SMARCA1P28370 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCA1P28370 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
SMARCA1P28370 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC20.65■□□□□ 0.9
SMARCA1P28370 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.9
SMARCA1P28370 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.9
SMARCA1P28370 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SMARCA1P28370 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SMARCA1P28370 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC20.64■□□□□ 0.9
SMARCA1P28370 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
SMARCA1P28370 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
SMARCA1P28370 TP73-AS1-210ENST00000637775 1455 ntBASIC20.64■□□□□ 0.89
SMARCA1P28370 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
SMARCA1P28370 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.64■□□□□ 0.89
SMARCA1P28370 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMARCA1P28370 IPPK-202ENST00000375522 882 ntTSL 3 BASIC20.64■□□□□ 0.89
SMARCA1P28370 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
SMARCA1P28370 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMARCA1P28370 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20.64■□□□□ 0.89
SMARCA1P28370 AC099336.1-202ENST00000602961 463 ntBASIC20.64■□□□□ 0.89
SMARCA1P28370 AL121772.3-201ENST00000610840 674 ntBASIC20.64■□□□□ 0.89
SMARCA1P28370 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
SMARCA1P28370 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMARCA1P28370 AC100803.2-201ENST00000562459 1963 ntBASIC20.64■□□□□ 0.89
SMARCA1P28370 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.64■□□□□ 0.89
SMARCA1P28370 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SMARCA1P28370 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMARCA1P28370 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.64■□□□□ 0.89
SMARCA1P28370 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
SMARCA1P28370 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC20.64■□□□□ 0.89
SMARCA1P28370 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
SMARCA1P28370 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC20.64■□□□□ 0.89
SMARCA1P28370 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.63■□□□□ 0.89
SMARCA1P28370 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCA1P28370 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCA1P28370 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCA1P28370 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCA1P28370 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCA1P28370 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCA1P28370 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCA1P28370 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCA1P28370 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
SMARCA1P28370 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCA1P28370 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCA1P28370 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
SMARCA1P28370 CD9-202ENST00000382515 1229 ntTSL 5 BASIC20.63■□□□□ 0.89
SMARCA1P28370 COX5BP2-201ENST00000392354 334 ntBASIC20.63■□□□□ 0.89
SMARCA1P28370 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
SMARCA1P28370 DUSP5P1-201ENST00000441325 1139 ntBASIC20.63■□□□□ 0.89
SMARCA1P28370 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms