Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HMGB1P09429 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
HMGB1P09429 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC21.29■■□□□ 1
HMGB1P09429 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC21.29■■□□□ 1
HMGB1P09429 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HMGB1P09429 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC21.29■■□□□ 1
HMGB1P09429 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC21.29■■□□□ 1
HMGB1P09429 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HMGB1P09429 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
HMGB1P09429 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC21.29■■□□□ 1
HMGB1P09429 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC21.29■■□□□ 1
HMGB1P09429 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC21.29■■□□□ 1
HMGB1P09429 AC004263.2-201ENST00000617183 678 ntBASIC21.29■■□□□ 1
HMGB1P09429 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
HMGB1P09429 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC21.29■■□□□ 1
HMGB1P09429 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
HMGB1P09429 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HMGB1P09429 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HMGB1P09429 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC21.28■■□□□ 1
HMGB1P09429 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
HMGB1P09429 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC21.28■■□□□ 1
HMGB1P09429 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HMGB1P09429 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
HMGB1P09429 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HMGB1P09429 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HMGB1P09429 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
HMGB1P09429 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
HMGB1P09429 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC21.28■■□□□ 1
HMGB1P09429 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HMGB1P09429 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC21.28■■□□□ 1
HMGB1P09429 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC21.28■■□□□ 1
HMGB1P09429 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HMGB1P09429 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HMGB1P09429 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
HMGB1P09429 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HMGB1P09429 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC21.28■■□□□ 1
HMGB1P09429 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HMGB1P09429 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
HMGB1P09429 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HMGB1P09429 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC21.27■■□□□ 1
HMGB1P09429 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC21.27■■□□□ 1
HMGB1P09429 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC21.27■■□□□ 1
HMGB1P09429 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC21.27■■□□□ 1
HMGB1P09429 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC21.27■■□□□ 1
HMGB1P09429 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
HMGB1P09429 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HMGB1P09429 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC21.27■■□□□ 1
HMGB1P09429 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC21.27■■□□□ 1
HMGB1P09429 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HMGB1P09429 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC21.27■■□□□ 1
HMGB1P09429 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC21.27■■□□□ 1
HMGB1P09429 GPR32P1-201ENST00000601788 811 ntBASIC21.27■■□□□ 1
HMGB1P09429 AC116407.2-201ENST00000613639 860 ntBASIC21.27■■□□□ 1
HMGB1P09429 ANKRD20A8P-203ENST00000641373 517 ntBASIC21.27■■□□□ 1
HMGB1P09429 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC21.27■■□□□ 1
HMGB1P09429 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
HMGB1P09429 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HMGB1P09429 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC21.27■■□□□ 1
HMGB1P09429 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC21.27■■□□□ 1
HMGB1P09429 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
HMGB1P09429 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
HMGB1P09429 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
HMGB1P09429 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC21.26■□□□□ 0.99
HMGB1P09429 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGB1P09429 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
HMGB1P09429 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGB1P09429 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC21.26■□□□□ 0.99
HMGB1P09429 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGB1P09429 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC21.26■□□□□ 0.99
HMGB1P09429 TSPY12P-201ENST00000421279 868 ntBASIC21.26■□□□□ 0.99
HMGB1P09429 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC21.26■□□□□ 0.99
HMGB1P09429 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC21.26■□□□□ 0.99
HMGB1P09429 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HMGB1P09429 NAA38-203ENST00000575071 553 ntTSL 2 BASIC21.26■□□□□ 0.99
HMGB1P09429 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC21.26■□□□□ 0.99
HMGB1P09429 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGB1P09429 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGB1P09429 NME9-203ENST00000383180 2133 ntTSL 2 BASIC21.26■□□□□ 0.99
HMGB1P09429 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGB1P09429 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
HMGB1P09429 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HMGB1P09429 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC21.26■□□□□ 0.99
HMGB1P09429 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
HMGB1P09429 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC21.25■□□□□ 0.99
HMGB1P09429 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
HMGB1P09429 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
HMGB1P09429 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC21.25■□□□□ 0.99
HMGB1P09429 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HMGB1P09429 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
HMGB1P09429 AL353692.3-201ENST00000407031 1396 ntBASIC21.25■□□□□ 0.99
HMGB1P09429 AC100803.2-201ENST00000562459 1963 ntBASIC21.25■□□□□ 0.99
HMGB1P09429 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC21.25■□□□□ 0.99
HMGB1P09429 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
HMGB1P09429 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
HMGB1P09429 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HMGB1P09429 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HMGB1P09429 SAPCD2P2-201ENST00000431719 1174 ntBASIC21.25■□□□□ 0.99
HMGB1P09429 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
HMGB1P09429 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC21.25■□□□□ 0.99
HMGB1P09429 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms