Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL2A1P02458 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC20.94■□□□□ 0.94
COL2A1P02458 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
COL2A1P02458 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL2A1P02458 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL2A1P02458 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
COL2A1P02458 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL2A1P02458 AC148477.5-201ENST00000625164 1645 ntBASIC20.93■□□□□ 0.94
COL2A1P02458 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL2A1P02458 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL2A1P02458 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC20.93■□□□□ 0.94
COL2A1P02458 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC20.93■□□□□ 0.94
COL2A1P02458 AC136632.2-201ENST00000512891 861 ntBASIC20.93■□□□□ 0.94
COL2A1P02458 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC20.93■□□□□ 0.94
COL2A1P02458 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.92■□□□□ 0.94
COL2A1P02458 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.92■□□□□ 0.94
COL2A1P02458 FUT8-AS1-201ENST00000621019 1521 ntBASIC20.92■□□□□ 0.94
COL2A1P02458 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL2A1P02458 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL2A1P02458 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL2A1P02458 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC20.92■□□□□ 0.94
COL2A1P02458 ELK2BP-201ENST00000415014 1224 ntBASIC20.92■□□□□ 0.94
COL2A1P02458 CRCP-205ENST00000431089 942 ntTSL 2 BASIC20.92■□□□□ 0.94
COL2A1P02458 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL2A1P02458 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.92■□□□□ 0.94
COL2A1P02458 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC20.92■□□□□ 0.94
COL2A1P02458 AC092865.5-201ENST00000545435 363 ntBASIC20.92■□□□□ 0.94
COL2A1P02458 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL2A1P02458 MIR1199-201ENST00000621445 119 ntBASIC20.92■□□□□ 0.94
COL2A1P02458 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC20.92■□□□□ 0.94
COL2A1P02458 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL2A1P02458 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL2A1P02458 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL2A1P02458 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL2A1P02458 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL2A1P02458 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.92■□□□□ 0.94
COL2A1P02458 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL2A1P02458 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL2A1P02458 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC20.92■□□□□ 0.94
COL2A1P02458 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL2A1P02458 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL2A1P02458 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL2A1P02458 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL2A1P02458 NCF1C-201ENST00000438382 1427 ntBASIC20.91■□□□□ 0.94
COL2A1P02458 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL2A1P02458 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL2A1P02458 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL2A1P02458 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
COL2A1P02458 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.91■□□□□ 0.94
COL2A1P02458 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.91■□□□□ 0.94
COL2A1P02458 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.91■□□□□ 0.94
COL2A1P02458 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.91■□□□□ 0.94
COL2A1P02458 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
COL2A1P02458 MIR1233-2-201ENST00000408138 82 ntBASIC20.91■□□□□ 0.94
COL2A1P02458 MIR1233-1-201ENST00000408722 82 ntBASIC20.91■□□□□ 0.94
COL2A1P02458 IMP4-203ENST00000409935 958 ntTSL 5 BASIC20.91■□□□□ 0.94
COL2A1P02458 HS6ST1P1-201ENST00000481504 1234 ntBASIC20.91■□□□□ 0.94
COL2A1P02458 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC20.91■□□□□ 0.94
COL2A1P02458 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL2A1P02458 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.91■□□□□ 0.94
COL2A1P02458 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
COL2A1P02458 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL2A1P02458 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
COL2A1P02458 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL2A1P02458 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC20.9■□□□□ 0.94
COL2A1P02458 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
COL2A1P02458 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC20.9■□□□□ 0.94
COL2A1P02458 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC20.9■□□□□ 0.94
COL2A1P02458 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC20.9■□□□□ 0.94
COL2A1P02458 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC20.9■□□□□ 0.94
COL2A1P02458 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC20.9■□□□□ 0.94
COL2A1P02458 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL2A1P02458 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL2A1P02458 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
COL2A1P02458 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC20.9■□□□□ 0.94
COL2A1P02458 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.9■□□□□ 0.94
COL2A1P02458 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC20.9■□□□□ 0.94
COL2A1P02458 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL2A1P02458 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL2A1P02458 WIZP1-201ENST00000531444 2299 ntBASIC20.89■□□□□ 0.94
COL2A1P02458 SIRPAP1-201ENST00000448467 1770 ntBASIC20.89■□□□□ 0.94
COL2A1P02458 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
COL2A1P02458 BX276092.7-203ENST00000637198 1536 ntBASIC20.89■□□□□ 0.94
COL2A1P02458 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
COL2A1P02458 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL2A1P02458 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC20.89■□□□□ 0.94
COL2A1P02458 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC20.89■□□□□ 0.94
COL2A1P02458 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
COL2A1P02458 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC20.89■□□□□ 0.94
COL2A1P02458 ARTN-206ENST00000472435 402 ntTSL 3 BASIC20.89■□□□□ 0.94
COL2A1P02458 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC20.89■□□□□ 0.94
COL2A1P02458 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC20.89■□□□□ 0.94
COL2A1P02458 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC20.89■□□□□ 0.94
COL2A1P02458 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC20.89■□□□□ 0.94
COL2A1P02458 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.94
COL2A1P02458 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.94
COL2A1P02458 AC004706.3-202ENST00000621574 984 ntBASIC20.89■□□□□ 0.94
COL2A1P02458 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC20.89■□□□□ 0.94
COL2A1P02458 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
COL2A1P02458 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms