Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS4BO75351 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS4BO75351 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
VPS4BO75351 MIR149-201ENST00000384879 89 ntBASIC17.71■□□□□ 0.43
VPS4BO75351 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VPS4BO75351 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VPS4BO75351 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VPS4BO75351 DUSP5P1-201ENST00000441325 1139 ntBASIC17.71■□□□□ 0.43
VPS4BO75351 HCG4P8-203ENST00000443049 980 ntBASIC17.71■□□□□ 0.43
VPS4BO75351 CA15P1-201ENST00000481698 905 ntBASIC17.71■□□□□ 0.43
VPS4BO75351 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
VPS4BO75351 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC17.71■□□□□ 0.43
VPS4BO75351 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.71■□□□□ 0.43
VPS4BO75351 AL138966.2-201ENST00000621997 464 ntBASIC17.71■□□□□ 0.43
VPS4BO75351 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VPS4BO75351 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
VPS4BO75351 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
VPS4BO75351 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
VPS4BO75351 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
VPS4BO75351 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
VPS4BO75351 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.42
VPS4BO75351 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
VPS4BO75351 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS4BO75351 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.7■□□□□ 0.42
VPS4BO75351 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.7■□□□□ 0.42
VPS4BO75351 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS4BO75351 AC009102.3-201ENST00000623118 1491 ntBASIC17.7■□□□□ 0.42
VPS4BO75351 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
VPS4BO75351 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS4BO75351 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS4BO75351 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.7■□□□□ 0.42
VPS4BO75351 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS4BO75351 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS4BO75351 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VPS4BO75351 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS4BO75351 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS4BO75351 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS4BO75351 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS4BO75351 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.7■□□□□ 0.42
VPS4BO75351 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
VPS4BO75351 HOMER2P1-201ENST00000455653 964 ntBASIC17.7■□□□□ 0.42
VPS4BO75351 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.7■□□□□ 0.42
VPS4BO75351 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.7■□□□□ 0.42
VPS4BO75351 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.7■□□□□ 0.42
VPS4BO75351 AL512604.3-201ENST00000569583 964 ntBASIC17.7■□□□□ 0.42
VPS4BO75351 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC17.7■□□□□ 0.42
VPS4BO75351 MIR3180-5-201ENST00000583743 153 ntBASIC17.7■□□□□ 0.42
VPS4BO75351 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC17.7■□□□□ 0.42
VPS4BO75351 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS4BO75351 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.7■□□□□ 0.42
VPS4BO75351 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.7■□□□□ 0.42
VPS4BO75351 AL163051.1-201ENST00000569214 1512 ntBASIC17.7■□□□□ 0.42
VPS4BO75351 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS4BO75351 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
VPS4BO75351 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS4BO75351 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS4BO75351 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
VPS4BO75351 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
VPS4BO75351 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
VPS4BO75351 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.7■□□□□ 0.42
VPS4BO75351 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
VPS4BO75351 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4BO75351 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
VPS4BO75351 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4BO75351 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS4BO75351 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
VPS4BO75351 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4BO75351 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4BO75351 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4BO75351 ANKRD20A18P-201ENST00000359341 492 ntBASIC17.69■□□□□ 0.42
VPS4BO75351 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
VPS4BO75351 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS4BO75351 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4BO75351 FAM86EP-206ENST00000510506 987 ntBASIC17.69■□□□□ 0.42
VPS4BO75351 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
VPS4BO75351 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4BO75351 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS4BO75351 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC17.69■□□□□ 0.42
VPS4BO75351 CLN6-214ENST00000636314 442 ntTSL 3 BASIC17.69■□□□□ 0.42
VPS4BO75351 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4BO75351 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4BO75351 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.69■□□□□ 0.42
VPS4BO75351 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
VPS4BO75351 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4BO75351 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4BO75351 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
VPS4BO75351 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4BO75351 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.68■□□□□ 0.42
VPS4BO75351 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4BO75351 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4BO75351 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4BO75351 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4BO75351 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC17.68■□□□□ 0.42
VPS4BO75351 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4BO75351 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4BO75351 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4BO75351 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4BO75351 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4BO75351 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
VPS4BO75351 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms