Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP3Q9Y6I4 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.85■□□□□ 0.61
USP3Q9Y6I4 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC18.85■□□□□ 0.61
USP3Q9Y6I4 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.85■□□□□ 0.61
USP3Q9Y6I4 CBFB-203ENST00000561924 584 ntTSL 5 BASIC18.85■□□□□ 0.61
USP3Q9Y6I4 PRR29-207ENST00000580752 458 ntTSL 3 BASIC18.85■□□□□ 0.61
USP3Q9Y6I4 AC012313.10-201ENST00000623509 926 ntBASIC18.85■□□□□ 0.61
USP3Q9Y6I4 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.85■□□□□ 0.61
USP3Q9Y6I4 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP3Q9Y6I4 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP3Q9Y6I4 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
USP3Q9Y6I4 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USP3Q9Y6I4 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 PNN-202ENST00000553331 656 ntTSL 3 BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USP3Q9Y6I4 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.83■□□□□ 0.61
USP3Q9Y6I4 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.61
USP3Q9Y6I4 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
USP3Q9Y6I4 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
USP3Q9Y6I4 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USP3Q9Y6I4 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
USP3Q9Y6I4 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.83■□□□□ 0.61
USP3Q9Y6I4 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
USP3Q9Y6I4 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
USP3Q9Y6I4 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
USP3Q9Y6I4 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.61
USP3Q9Y6I4 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
USP3Q9Y6I4 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.83■□□□□ 0.61
USP3Q9Y6I4 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
USP3Q9Y6I4 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP3Q9Y6I4 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP3Q9Y6I4 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP3Q9Y6I4 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.83■□□□□ 0.6
USP3Q9Y6I4 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.83■□□□□ 0.6
USP3Q9Y6I4 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.83■□□□□ 0.6
USP3Q9Y6I4 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC18.83■□□□□ 0.6
USP3Q9Y6I4 TBCB-205ENST00000585746 875 ntTSL 3 BASIC18.83■□□□□ 0.6
USP3Q9Y6I4 AL138831.2-201ENST00000606564 490 ntBASIC18.83■□□□□ 0.6
USP3Q9Y6I4 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
USP3Q9Y6I4 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP3Q9Y6I4 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP3Q9Y6I4 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP3Q9Y6I4 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP3Q9Y6I4 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP3Q9Y6I4 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP3Q9Y6I4 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP3Q9Y6I4 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
USP3Q9Y6I4 AC125634.1-201ENST00000438758 1403 ntBASIC18.83■□□□□ 0.6
USP3Q9Y6I4 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 AC022898.2-201ENST00000616822 1312 ntBASIC18.82■□□□□ 0.6
USP3Q9Y6I4 AC138028.4-201ENST00000564984 1845 ntBASIC18.82■□□□□ 0.6
USP3Q9Y6I4 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 KRT126P-201ENST00000549467 1181 ntBASIC18.82■□□□□ 0.6
USP3Q9Y6I4 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 BNIP3P18-201ENST00000593976 575 ntBASIC18.82■□□□□ 0.6
USP3Q9Y6I4 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.82■□□□□ 0.6
USP3Q9Y6I4 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms