Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRERF1Q96PN7 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC20.95■□□□□ 0.94
TRERF1Q96PN7 PCDHB18P-201ENST00000524813 2368 ntBASIC20.95■□□□□ 0.94
TRERF1Q96PN7 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
TRERF1Q96PN7 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC20.95■□□□□ 0.94
TRERF1Q96PN7 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRERF1Q96PN7 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRERF1Q96PN7 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.95■□□□□ 0.94
TRERF1Q96PN7 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRERF1Q96PN7 NOC2LP1-202ENST00000452600 2235 ntBASIC20.95■□□□□ 0.94
TRERF1Q96PN7 VENTXP7-201ENST00000475503 772 ntBASIC20.95■□□□□ 0.94
TRERF1Q96PN7 BET1L-206ENST00000486280 665 ntTSL 3 BASIC20.95■□□□□ 0.94
TRERF1Q96PN7 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC20.95■□□□□ 0.94
TRERF1Q96PN7 AC011840.4-201ENST00000578471 627 ntBASIC20.95■□□□□ 0.94
TRERF1Q96PN7 LINC01711-201ENST00000598340 967 ntBASIC20.95■□□□□ 0.94
TRERF1Q96PN7 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRERF1Q96PN7 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRERF1Q96PN7 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC20.95■□□□□ 0.94
TRERF1Q96PN7 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.95■□□□□ 0.94
TRERF1Q96PN7 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRERF1Q96PN7 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRERF1Q96PN7 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 NSUN5P1-202ENST00000421140 1535 ntBASIC20.94■□□□□ 0.94
TRERF1Q96PN7 NSUN5P2-203ENST00000457352 1529 ntBASIC20.94■□□□□ 0.94
TRERF1Q96PN7 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 AC113404.2-201ENST00000507884 177 ntBASIC20.94■□□□□ 0.94
TRERF1Q96PN7 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 ABR-204ENST00000543210 1049 ntTSL 2 BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 ABR-217ENST00000572441 563 ntTSL 4 BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRERF1Q96PN7 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 AL024508.2-201ENST00000607749 1894 ntBASIC20.93■□□□□ 0.94
TRERF1Q96PN7 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 AC008687.5-201ENST00000593746 558 ntBASIC20.93■□□□□ 0.94
TRERF1Q96PN7 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TRERF1Q96PN7 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 FDX1P1-201ENST00000449115 551 ntBASIC20.92■□□□□ 0.94
TRERF1Q96PN7 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.92■□□□□ 0.94
TRERF1Q96PN7 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRERF1Q96PN7 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms