Protein–RNA interactions for Protein: Q96NG5

ZNF558, Zinc finger protein 558, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558Q96NG5 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF558Q96NG5 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC19.12■□□□□ 0.65
ZNF558Q96NG5 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF558Q96NG5 AC005104.2-201ENST00000427818 678 ntBASIC19.12■□□□□ 0.65
ZNF558Q96NG5 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
ZNF558Q96NG5 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC19.12■□□□□ 0.65
ZNF558Q96NG5 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
ZNF558Q96NG5 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF558Q96NG5 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
ZNF558Q96NG5 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 AC079776.2-201ENST00000641154 1609 ntBASIC19.11■□□□□ 0.65
ZNF558Q96NG5 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 BX005266.1-201ENST00000473402 457 ntBASIC19.11■□□□□ 0.65
ZNF558Q96NG5 NMU-202ENST00000505262 693 ntTSL 3 BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 UNC93B6-202ENST00000528242 690 ntBASIC19.11■□□□□ 0.65
ZNF558Q96NG5 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 RPS29-206ENST00000557111 488 ntTSL 2 BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
ZNF558Q96NG5 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF558Q96NG5 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC19.1■□□□□ 0.65
ZNF558Q96NG5 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
ZNF558Q96NG5 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF558Q96NG5 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.1■□□□□ 0.65
ZNF558Q96NG5 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF558Q96NG5 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF558Q96NG5 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF558Q96NG5 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF558Q96NG5 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF558Q96NG5 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF558Q96NG5 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.1■□□□□ 0.65
ZNF558Q96NG5 AC096633.1-201ENST00000422446 749 ntBASIC19.1■□□□□ 0.65
ZNF558Q96NG5 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC19.1■□□□□ 0.65
ZNF558Q96NG5 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC19.1■□□□□ 0.65
ZNF558Q96NG5 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF558Q96NG5 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC19.1■□□□□ 0.65
ZNF558Q96NG5 AL691403.2-201ENST00000618460 490 ntBASIC19.1■□□□□ 0.65
ZNF558Q96NG5 AL022326.1-202ENST00000641533 845 ntBASIC19.1■□□□□ 0.65
ZNF558Q96NG5 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF558Q96NG5 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF558Q96NG5 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF558Q96NG5 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF558Q96NG5 ESPNP-201ENST00000270691 2015 ntBASIC19.1■□□□□ 0.65
ZNF558Q96NG5 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF558Q96NG5 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.1■□□□□ 0.65
ZNF558Q96NG5 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
ZNF558Q96NG5 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 HS6ST1P1-201ENST00000481504 1234 ntBASIC19.09■□□□□ 0.65
ZNF558Q96NG5 AC122714.2-201ENST00000502787 707 ntBASIC19.09■□□□□ 0.65
ZNF558Q96NG5 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 PMPCAP1-201ENST00000508114 1576 ntBASIC19.09■□□□□ 0.65
ZNF558Q96NG5 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
ZNF558Q96NG5 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
ZNF558Q96NG5 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
ZNF558Q96NG5 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC19.08■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms