Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC42Q96M95 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.5■□□□□ 0.71
CCDC42Q96M95 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC19.5■□□□□ 0.71
CCDC42Q96M95 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC42Q96M95 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.5■□□□□ 0.71
CCDC42Q96M95 WWOX-216ENST00000569818 525 ntBASIC19.5■□□□□ 0.71
CCDC42Q96M95 AL023803.3-201ENST00000615559 522 ntBASIC19.5■□□□□ 0.71
CCDC42Q96M95 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC42Q96M95 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC42Q96M95 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC42Q96M95 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC42Q96M95 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC42Q96M95 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC42Q96M95 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC42Q96M95 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CCDC42Q96M95 AL024508.2-201ENST00000607749 1894 ntBASIC19.5■□□□□ 0.71
CCDC42Q96M95 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC42Q96M95 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC42Q96M95 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC42Q96M95 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC42Q96M95 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC42Q96M95 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC42Q96M95 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC42Q96M95 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CCDC42Q96M95 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC42Q96M95 SLC25A1P2-201ENST00000430693 912 ntBASIC19.49■□□□□ 0.71
CCDC42Q96M95 TSPY17P-201ENST00000450329 467 ntBASIC19.49■□□□□ 0.71
CCDC42Q96M95 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.49■□□□□ 0.71
CCDC42Q96M95 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC42Q96M95 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC42Q96M95 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CCDC42Q96M95 AC142381.4-202ENST00000563973 229 ntBASIC19.49■□□□□ 0.71
CCDC42Q96M95 AL353719.1-201ENST00000566847 864 ntBASIC19.49■□□□□ 0.71
CCDC42Q96M95 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC42Q96M95 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC42Q96M95 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC42Q96M95 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC42Q96M95 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
CCDC42Q96M95 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CCDC42Q96M95 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC42Q96M95 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC42Q96M95 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC19.49■□□□□ 0.71
CCDC42Q96M95 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC19.49■□□□□ 0.71
CCDC42Q96M95 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC42Q96M95 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC42Q96M95 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC42Q96M95 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC42Q96M95 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC42Q96M95 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CCDC42Q96M95 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC42Q96M95 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
CCDC42Q96M95 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC42Q96M95 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC42Q96M95 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC42Q96M95 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC42Q96M95 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC42Q96M95 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC42Q96M95 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC42Q96M95 AC009053.2-201ENST00000563701 2365 ntBASIC19.48■□□□□ 0.71
CCDC42Q96M95 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
CCDC42Q96M95 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC42Q96M95 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC42Q96M95 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC42Q96M95 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC42Q96M95 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC42Q96M95 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC42Q96M95 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC42Q96M95 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC42Q96M95 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC42Q96M95 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CCDC42Q96M95 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC42Q96M95 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CCDC42Q96M95 AC012618.2-201ENST00000428058 849 ntBASIC19.48■□□□□ 0.71
CCDC42Q96M95 UBE2SP1-201ENST00000450587 669 ntBASIC19.48■□□□□ 0.71
CCDC42Q96M95 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC42Q96M95 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC42Q96M95 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC42Q96M95 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC42Q96M95 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC42Q96M95 MIR3180-4-201ENST00000582223 153 ntBASIC19.48■□□□□ 0.71
CCDC42Q96M95 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
CCDC42Q96M95 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC42Q96M95 AL049637.2-201ENST00000641778 930 ntBASIC19.48■□□□□ 0.71
CCDC42Q96M95 AC080080.1-201ENST00000625121 2420 ntBASIC19.48■□□□□ 0.71
CCDC42Q96M95 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC42Q96M95 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.48■□□□□ 0.71
CCDC42Q96M95 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC42Q96M95 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
CCDC42Q96M95 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
CCDC42Q96M95 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC19.48■□□□□ 0.71
CCDC42Q96M95 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC42Q96M95 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC19.48■□□□□ 0.71
CCDC42Q96M95 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC42Q96M95 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC42Q96M95 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
CCDC42Q96M95 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC42Q96M95 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC19.48■□□□□ 0.71
CCDC42Q96M95 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CCDC42Q96M95 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC42Q96M95 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms