Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLIP3Q96DZ5 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 AL163051.1-201ENST00000569214 1512 ntBASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 GPR32P1-201ENST00000601788 811 ntBASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 AL121894.2-201ENST00000602977 491 ntBASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 IGHV3-41-201ENST00000613121 348 ntBASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 AL691432.3-201ENST00000621860 400 ntBASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 AP000997.3-201ENST00000623333 2250 ntBASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CLIP3Q96DZ5 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 LINC00265-3P-201ENST00000447588 903 ntBASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 MIR3180-1-201ENST00000580374 94 ntBASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 MIR3180-3-201ENST00000584616 94 ntBASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CLIP3Q96DZ5 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 KRT18P41-201ENST00000518924 1277 ntBASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 AC090616.6-201ENST00000582640 721 ntBASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 AL390719.2-201ENST00000606993 987 ntBASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms