Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AC092119.3-201ENST00000612618 583 ntBASIC18.54■□□□□ 0.56
SKA1Q96BD8 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.54■□□□□ 0.56
SKA1Q96BD8 VPS72-207ENST00000640458 689 ntTSL 5 BASIC18.54■□□□□ 0.56
SKA1Q96BD8 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC18.54■□□□□ 0.56
SKA1Q96BD8 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SKA1Q96BD8 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SKA1Q96BD8 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SKA1Q96BD8 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SKA1Q96BD8 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SKA1Q96BD8 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SKA1Q96BD8 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SKA1Q96BD8 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SKA1Q96BD8 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SKA1Q96BD8 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
SKA1Q96BD8 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.53■□□□□ 0.56
SKA1Q96BD8 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.53■□□□□ 0.56
SKA1Q96BD8 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SKA1Q96BD8 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
SKA1Q96BD8 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
SKA1Q96BD8 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SKA1Q96BD8 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.53■□□□□ 0.56
SKA1Q96BD8 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.53■□□□□ 0.56
SKA1Q96BD8 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SKA1Q96BD8 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SKA1Q96BD8 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SKA1Q96BD8 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SKA1Q96BD8 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SKA1Q96BD8 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC18.53■□□□□ 0.56
SKA1Q96BD8 SPDYE13P-201ENST00000445314 798 ntBASIC18.53■□□□□ 0.56
SKA1Q96BD8 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.53■□□□□ 0.56
SKA1Q96BD8 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.53■□□□□ 0.56
SKA1Q96BD8 NAA38-203ENST00000575071 553 ntTSL 2 BASIC18.53■□□□□ 0.56
SKA1Q96BD8 NPAP1P7-201ENST00000613027 823 ntBASIC18.53■□□□□ 0.56
SKA1Q96BD8 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SKA1Q96BD8 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SKA1Q96BD8 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SKA1Q96BD8 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.53■□□□□ 0.56
SKA1Q96BD8 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.53■□□□□ 0.56
SKA1Q96BD8 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.52■□□□□ 0.56
SKA1Q96BD8 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.52■□□□□ 0.56
SKA1Q96BD8 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
SKA1Q96BD8 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.52■□□□□ 0.56
SKA1Q96BD8 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
SKA1Q96BD8 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SKA1Q96BD8 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SKA1Q96BD8 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SKA1Q96BD8 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
SKA1Q96BD8 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.52■□□□□ 0.56
SKA1Q96BD8 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.52■□□□□ 0.56
SKA1Q96BD8 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
SKA1Q96BD8 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SKA1Q96BD8 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SKA1Q96BD8 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.52■□□□□ 0.56
SKA1Q96BD8 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SKA1Q96BD8 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SKA1Q96BD8 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC18.52■□□□□ 0.56
SKA1Q96BD8 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
SKA1Q96BD8 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18.52■□□□□ 0.56
SKA1Q96BD8 KRT8P26-201ENST00000534154 1276 ntBASIC18.52■□□□□ 0.56
SKA1Q96BD8 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SKA1Q96BD8 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SKA1Q96BD8 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
SKA1Q96BD8 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.52■□□□□ 0.56
SKA1Q96BD8 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SKA1Q96BD8 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SKA1Q96BD8 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC18.52■□□□□ 0.55
SKA1Q96BD8 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.52■□□□□ 0.55
SKA1Q96BD8 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SKA1Q96BD8 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
SKA1Q96BD8 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.52■□□□□ 0.55
SKA1Q96BD8 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SKA1Q96BD8 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
SKA1Q96BD8 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
SKA1Q96BD8 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
SKA1Q96BD8 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SKA1Q96BD8 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.51■□□□□ 0.55
SKA1Q96BD8 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SKA1Q96BD8 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SKA1Q96BD8 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.51■□□□□ 0.55
SKA1Q96BD8 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.51■□□□□ 0.55
SKA1Q96BD8 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.51■□□□□ 0.55
SKA1Q96BD8 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SKA1Q96BD8 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SKA1Q96BD8 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SKA1Q96BD8 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.51■□□□□ 0.55
SKA1Q96BD8 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.51■□□□□ 0.55
SKA1Q96BD8 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SKA1Q96BD8 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
SKA1Q96BD8 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC18.51■□□□□ 0.55
SKA1Q96BD8 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SKA1Q96BD8 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SKA1Q96BD8 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SKA1Q96BD8 SEC1P-202ENST00000473944 940 ntBASIC18.51■□□□□ 0.55
SKA1Q96BD8 MIR3917-201ENST00000580971 93 ntBASIC18.51■□□□□ 0.55
SKA1Q96BD8 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
SKA1Q96BD8 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC18.51■□□□□ 0.55
SKA1Q96BD8 WDR88-203ENST00000592765 651 ntTSL 5 BASIC18.51■□□□□ 0.55
SKA1Q96BD8 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SKA1Q96BD8 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.51■□□□□ 0.55
SKA1Q96BD8 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms