Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC4Q92889 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC4Q92889 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC4Q92889 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC4Q92889 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC4Q92889 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ERCC4Q92889 AC006116.8-202ENST00000587620 1550 ntBASIC20.51■□□□□ 0.87
ERCC4Q92889 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC4Q92889 AC141586.5-201ENST00000624546 2050 ntBASIC20.5■□□□□ 0.87
ERCC4Q92889 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC4Q92889 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
ERCC4Q92889 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC20.5■□□□□ 0.87
ERCC4Q92889 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC4Q92889 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC4Q92889 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC4Q92889 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC20.5■□□□□ 0.87
ERCC4Q92889 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC4Q92889 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC4Q92889 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC4Q92889 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
ERCC4Q92889 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC4Q92889 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
ERCC4Q92889 MIR149-201ENST00000384879 89 ntBASIC20.5■□□□□ 0.87
ERCC4Q92889 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.5■□□□□ 0.87
ERCC4Q92889 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
ERCC4Q92889 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.5■□□□□ 0.87
ERCC4Q92889 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.5■□□□□ 0.87
ERCC4Q92889 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC4Q92889 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
ERCC4Q92889 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC4Q92889 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC20.5■□□□□ 0.87
ERCC4Q92889 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
ERCC4Q92889 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
ERCC4Q92889 BANP-227ENST00000626016 2144 ntTSL 2 BASIC20.5■□□□□ 0.87
ERCC4Q92889 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC20.49■□□□□ 0.87
ERCC4Q92889 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC20.49■□□□□ 0.87
ERCC4Q92889 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
ERCC4Q92889 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC4Q92889 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC4Q92889 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC4Q92889 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC4Q92889 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC4Q92889 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC4Q92889 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC20.49■□□□□ 0.87
ERCC4Q92889 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC4Q92889 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC4Q92889 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC4Q92889 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC4Q92889 INGX-201ENST00000359239 846 ntBASIC20.49■□□□□ 0.87
ERCC4Q92889 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.49■□□□□ 0.87
ERCC4Q92889 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC4Q92889 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.49■□□□□ 0.87
ERCC4Q92889 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.49■□□□□ 0.87
ERCC4Q92889 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC20.49■□□□□ 0.87
ERCC4Q92889 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.49■□□□□ 0.87
ERCC4Q92889 AP005242.2-201ENST00000580065 1175 ntBASIC20.49■□□□□ 0.87
ERCC4Q92889 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC20.49■□□□□ 0.87
ERCC4Q92889 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC4Q92889 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.49■□□□□ 0.87
ERCC4Q92889 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC4Q92889 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
ERCC4Q92889 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC4Q92889 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC20.49■□□□□ 0.87
ERCC4Q92889 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
ERCC4Q92889 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC4Q92889 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC4Q92889 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC4Q92889 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC4Q92889 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC4Q92889 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC20.48■□□□□ 0.87
ERCC4Q92889 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC20.48■□□□□ 0.87
ERCC4Q92889 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC4Q92889 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.48■□□□□ 0.87
ERCC4Q92889 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
ERCC4Q92889 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
ERCC4Q92889 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.48■□□□□ 0.87
ERCC4Q92889 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.48■□□□□ 0.87
ERCC4Q92889 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.48■□□□□ 0.87
ERCC4Q92889 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.48■□□□□ 0.87
ERCC4Q92889 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.48■□□□□ 0.87
ERCC4Q92889 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
ERCC4Q92889 AL353719.1-201ENST00000566847 864 ntBASIC20.48■□□□□ 0.87
ERCC4Q92889 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.48■□□□□ 0.87
ERCC4Q92889 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.48■□□□□ 0.87
ERCC4Q92889 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.48■□□□□ 0.87
ERCC4Q92889 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
ERCC4Q92889 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC4Q92889 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC4Q92889 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
ERCC4Q92889 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
ERCC4Q92889 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC4Q92889 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC20.48■□□□□ 0.87
ERCC4Q92889 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
ERCC4Q92889 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC4Q92889 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC4Q92889 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC4Q92889 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC4Q92889 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
ERCC4Q92889 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC20.47■□□□□ 0.87
ERCC4Q92889 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms