Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 AC009947.2-201ENST00000444014 672 ntBASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 AC010653.2-201ENST00000623505 997 ntBASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
ATG4AQ8WYN0 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.72■□□□□ 0.59
ATG4AQ8WYN0 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 PCDHA12-202ENST00000613593 2588 ntBASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 EGLN1P1-201ENST00000531623 762 ntBASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 AC010947.1-201ENST00000623454 693 ntBASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
ATG4AQ8WYN0 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
ATG4AQ8WYN0 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms