Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
HDDC3Q8N4P3 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC18.08■□□□□ 0.49
HDDC3Q8N4P3 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC18.08■□□□□ 0.49
HDDC3Q8N4P3 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HDDC3Q8N4P3 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
HDDC3Q8N4P3 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC18.08■□□□□ 0.49
HDDC3Q8N4P3 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
HDDC3Q8N4P3 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.48
HDDC3Q8N4P3 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.08■□□□□ 0.48
HDDC3Q8N4P3 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC18.08■□□□□ 0.48
HDDC3Q8N4P3 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.08■□□□□ 0.48
HDDC3Q8N4P3 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.08■□□□□ 0.48
HDDC3Q8N4P3 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.08■□□□□ 0.48
HDDC3Q8N4P3 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.08■□□□□ 0.48
HDDC3Q8N4P3 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC18.08■□□□□ 0.48
HDDC3Q8N4P3 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
HDDC3Q8N4P3 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
HDDC3Q8N4P3 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HDDC3Q8N4P3 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
HDDC3Q8N4P3 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.08■□□□□ 0.48
HDDC3Q8N4P3 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
HDDC3Q8N4P3 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
HDDC3Q8N4P3 ESPNP-201ENST00000270691 2015 ntBASIC18.08■□□□□ 0.48
HDDC3Q8N4P3 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HDDC3Q8N4P3 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HDDC3Q8N4P3 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.08■□□□□ 0.48
HDDC3Q8N4P3 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
HDDC3Q8N4P3 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
HDDC3Q8N4P3 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 MEG3-211ENST00000452514 461 ntTSL 3 BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 POLD2P1-201ENST00000511220 997 ntBASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 RNA5SP419-201ENST00000515908 135 ntBASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 CROCCP3-202ENST00000420820 1947 ntBASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.07■□□□□ 0.48
HDDC3Q8N4P3 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 MIR940-201ENST00000401276 94 ntBASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 BX842568.4-201ENST00000421222 227 ntBASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 AC092183.1-201ENST00000469884 875 ntBASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 AC112698.1-201ENST00000510299 916 ntBASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 AC106730.1-201ENST00000566722 1090 ntBASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 AL138831.2-201ENST00000606564 490 ntBASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
HDDC3Q8N4P3 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 ZNF259P1-201ENST00000407656 1365 ntBASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HDDC3Q8N4P3 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms