Protein–RNA interactions for Protein: Q6ZNA4

RNF111, E3 ubiquitin-protein ligase Arkadia, humanhuman

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF111Q6ZNA4 FLJ13224-201ENST00000313737 1514 ntBASIC17.57■□□□□ 0.4
RNF111Q6ZNA4 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
RNF111Q6ZNA4 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
RNF111Q6ZNA4 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
RNF111Q6ZNA4 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 AC211429.1-201ENST00000415277 523 ntBASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 UBALD1-205ENST00000590891 2641 ntBASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RNF111Q6ZNA4 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 TBC1D3P2-202ENST00000577902 1649 ntBASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 AC006116.8-202ENST00000587620 1550 ntBASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 AC007663.1-201ENST00000438948 1240 ntBASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 LINC01023-201ENST00000606054 436 ntBASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 AC092338.2-201ENST00000568827 1415 ntBASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RNF111Q6ZNA4 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 LINC00602-201ENST00000629776 2065 ntBASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 AP003041.3-201ENST00000527151 707 ntBASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 AC010653.2-201ENST00000623505 997 ntBASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 AC068587.9-201ENST00000641814 219 ntBASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.54■□□□□ 0.4
RNF111Q6ZNA4 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RNF111Q6ZNA4 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms