Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
KRT39Q6A163 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.52■□□□□ 0.71
KRT39Q6A163 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC19.52■□□□□ 0.71
KRT39Q6A163 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
KRT39Q6A163 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
KRT39Q6A163 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
KRT39Q6A163 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
KRT39Q6A163 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.71
KRT39Q6A163 KRT18P55-202ENST00000578578 1546 ntBASIC19.51■□□□□ 0.71
KRT39Q6A163 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
KRT39Q6A163 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
KRT39Q6A163 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
KRT39Q6A163 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC19.51■□□□□ 0.71
KRT39Q6A163 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
KRT39Q6A163 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
KRT39Q6A163 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
KRT39Q6A163 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
KRT39Q6A163 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC19.51■□□□□ 0.71
KRT39Q6A163 DAP-202ENST00000432074 1048 ntTSL 2 BASIC19.51■□□□□ 0.71
KRT39Q6A163 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.51■□□□□ 0.71
KRT39Q6A163 KRT18P65-201ENST00000439811 1286 ntBASIC19.51■□□□□ 0.71
KRT39Q6A163 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
KRT39Q6A163 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
KRT39Q6A163 GPR32P1-201ENST00000601788 811 ntBASIC19.51■□□□□ 0.71
KRT39Q6A163 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.51■□□□□ 0.71
KRT39Q6A163 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
KRT39Q6A163 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
KRT39Q6A163 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
KRT39Q6A163 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC19.51■□□□□ 0.71
KRT39Q6A163 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
KRT39Q6A163 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
KRT39Q6A163 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
KRT39Q6A163 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
KRT39Q6A163 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC19.51■□□□□ 0.71
KRT39Q6A163 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
KRT39Q6A163 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
KRT39Q6A163 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
KRT39Q6A163 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
KRT39Q6A163 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
KRT39Q6A163 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.51■□□□□ 0.71
KRT39Q6A163 AC022898.2-201ENST00000616822 1312 ntBASIC19.51■□□□□ 0.71
KRT39Q6A163 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
KRT39Q6A163 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
KRT39Q6A163 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
KRT39Q6A163 AC068880.1-201ENST00000507289 2297 ntBASIC19.5■□□□□ 0.71
KRT39Q6A163 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
KRT39Q6A163 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
KRT39Q6A163 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC19.5■□□□□ 0.71
KRT39Q6A163 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
KRT39Q6A163 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC19.5■□□□□ 0.71
KRT39Q6A163 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
KRT39Q6A163 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
KRT39Q6A163 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
KRT39Q6A163 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
KRT39Q6A163 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
KRT39Q6A163 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
KRT39Q6A163 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
KRT39Q6A163 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
KRT39Q6A163 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.5■□□□□ 0.71
KRT39Q6A163 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19.5■□□□□ 0.71
KRT39Q6A163 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC19.5■□□□□ 0.71
KRT39Q6A163 AC005332.3-201ENST00000589904 676 ntBASIC19.5■□□□□ 0.71
KRT39Q6A163 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
KRT39Q6A163 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.5■□□□□ 0.71
KRT39Q6A163 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
KRT39Q6A163 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
KRT39Q6A163 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
KRT39Q6A163 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
KRT39Q6A163 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
KRT39Q6A163 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC19.5■□□□□ 0.71
KRT39Q6A163 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
KRT39Q6A163 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
KRT39Q6A163 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
KRT39Q6A163 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
KRT39Q6A163 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC19.49■□□□□ 0.71
KRT39Q6A163 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
KRT39Q6A163 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
KRT39Q6A163 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
KRT39Q6A163 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
KRT39Q6A163 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
KRT39Q6A163 AL353692.3-201ENST00000407031 1396 ntBASIC19.49■□□□□ 0.71
KRT39Q6A163 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC19.49■□□□□ 0.71
KRT39Q6A163 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
KRT39Q6A163 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
KRT39Q6A163 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
KRT39Q6A163 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC19.49■□□□□ 0.71
KRT39Q6A163 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC19.49■□□□□ 0.71
KRT39Q6A163 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
KRT39Q6A163 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
KRT39Q6A163 AL031133.1-201ENST00000406807 723 ntBASIC19.49■□□□□ 0.71
KRT39Q6A163 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.49■□□□□ 0.71
KRT39Q6A163 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
KRT39Q6A163 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC19.49■□□□□ 0.71
KRT39Q6A163 NTF6B-201ENST00000591913 560 ntBASIC19.49■□□□□ 0.71
KRT39Q6A163 AL590326.2-201ENST00000625139 305 ntBASIC19.49■□□□□ 0.71
KRT39Q6A163 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
KRT39Q6A163 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
KRT39Q6A163 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC19.49■□□□□ 0.71
KRT39Q6A163 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
KRT39Q6A163 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms