Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 HES2-202ENST00000377836 507 ntTSL 2 BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 AL645929.1-201ENST00000420084 975 ntBASIC21.8■■□□□ 1.08
VPS53Q5VIR6 DAP-202ENST00000432074 1048 ntTSL 2 BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 RMI2-205ENST00000576027 818 ntTSL 2 BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 AL358472.4-201ENST00000633140 710 ntBASIC21.8■■□□□ 1.08
VPS53Q5VIR6 SP100-208ENST00000427101 1922 ntTSL 2 BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
VPS53Q5VIR6 AL096828.2-201ENST00000567259 1965 ntBASIC21.79■■□□□ 1.08
VPS53Q5VIR6 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS53Q5VIR6 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VPS53Q5VIR6 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC21.79■■□□□ 1.08
VPS53Q5VIR6 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC21.79■■□□□ 1.08
VPS53Q5VIR6 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VPS53Q5VIR6 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VPS53Q5VIR6 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS53Q5VIR6 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
VPS53Q5VIR6 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
VPS53Q5VIR6 AC138028.4-201ENST00000564984 1845 ntBASIC21.79■■□□□ 1.08
VPS53Q5VIR6 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC21.79■■□□□ 1.08
VPS53Q5VIR6 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS53Q5VIR6 CNP-204ENST00000472031 1019 ntTSL 2 BASIC21.79■■□□□ 1.08
VPS53Q5VIR6 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VPS53Q5VIR6 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC21.79■■□□□ 1.08
VPS53Q5VIR6 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS53Q5VIR6 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS53Q5VIR6 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS53Q5VIR6 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VPS53Q5VIR6 CD276-203ENST00000537340 2439 ntTSL 2 BASIC21.79■■□□□ 1.08
VPS53Q5VIR6 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC21.79■■□□□ 1.08
VPS53Q5VIR6 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS53Q5VIR6 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC21.78■■□□□ 1.08
VPS53Q5VIR6 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC21.78■■□□□ 1.08
VPS53Q5VIR6 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS53Q5VIR6 GATB-213ENST00000515812 1893 ntTSL 5 BASIC21.78■■□□□ 1.08
VPS53Q5VIR6 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VPS53Q5VIR6 PCED1CP-201ENST00000419887 785 ntBASIC21.78■■□□□ 1.08
VPS53Q5VIR6 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VPS53Q5VIR6 RNF146-204ENST00000476956 884 ntTSL 2 BASIC21.78■■□□□ 1.08
VPS53Q5VIR6 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC21.78■■□□□ 1.08
VPS53Q5VIR6 REXO1L9P-201ENST00000604264 2108 ntBASIC21.78■■□□□ 1.08
VPS53Q5VIR6 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC21.78■■□□□ 1.08
VPS53Q5VIR6 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS53Q5VIR6 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
VPS53Q5VIR6 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS53Q5VIR6 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS53Q5VIR6 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VPS53Q5VIR6 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS53Q5VIR6 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC21.78■■□□□ 1.08
VPS53Q5VIR6 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VPS53Q5VIR6 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VPS53Q5VIR6 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VPS53Q5VIR6 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VPS53Q5VIR6 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VPS53Q5VIR6 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VPS53Q5VIR6 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VPS53Q5VIR6 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC21.77■■□□□ 1.08
VPS53Q5VIR6 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
VPS53Q5VIR6 AC132938.6-201ENST00000623828 1655 ntBASIC21.77■■□□□ 1.08
VPS53Q5VIR6 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VPS53Q5VIR6 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC21.77■■□□□ 1.08
VPS53Q5VIR6 AC116407.4-201ENST00000623319 1061 ntBASIC21.77■■□□□ 1.08
VPS53Q5VIR6 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VPS53Q5VIR6 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VPS53Q5VIR6 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VPS53Q5VIR6 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
VPS53Q5VIR6 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC21.77■■□□□ 1.07
VPS53Q5VIR6 AC005332.8-201ENST00000622750 2735 ntBASIC21.77■■□□□ 1.07
VPS53Q5VIR6 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.07
VPS53Q5VIR6 LETM1P2-201ENST00000597330 2178 ntBASIC21.77■■□□□ 1.07
VPS53Q5VIR6 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
VPS53Q5VIR6 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
VPS53Q5VIR6 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms