Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LRIF1Q5T3J3 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 SEC1P-202ENST00000473944 940 ntBASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 REEP1-209ENST00000541910 969 ntTSL 2 BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
LRIF1Q5T3J3 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LRIF1Q5T3J3 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.02■□□□□ 0.32
LRIF1Q5T3J3 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
LRIF1Q5T3J3 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.02■□□□□ 0.32
LRIF1Q5T3J3 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LRIF1Q5T3J3 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
LRIF1Q5T3J3 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.32
LRIF1Q5T3J3 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
LRIF1Q5T3J3 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LRIF1Q5T3J3 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LRIF1Q5T3J3 LINC00602-201ENST00000629776 2065 ntBASIC17.02■□□□□ 0.32
LRIF1Q5T3J3 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
LRIF1Q5T3J3 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LRIF1Q5T3J3 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LRIF1Q5T3J3 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.32
LRIF1Q5T3J3 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.02■□□□□ 0.32
LRIF1Q5T3J3 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.02■□□□□ 0.32
LRIF1Q5T3J3 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LRIF1Q5T3J3 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.02■□□□□ 0.32
LRIF1Q5T3J3 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.02■□□□□ 0.31
LRIF1Q5T3J3 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
LRIF1Q5T3J3 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC17.02■□□□□ 0.31
LRIF1Q5T3J3 LINC00167-201ENST00000530583 1419 ntBASIC17.02■□□□□ 0.31
LRIF1Q5T3J3 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
LRIF1Q5T3J3 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.02■□□□□ 0.31
LRIF1Q5T3J3 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
LRIF1Q5T3J3 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.02■□□□□ 0.31
LRIF1Q5T3J3 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.02■□□□□ 0.31
LRIF1Q5T3J3 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
LRIF1Q5T3J3 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
LRIF1Q5T3J3 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC17.02■□□□□ 0.31
LRIF1Q5T3J3 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
LRIF1Q5T3J3 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LRIF1Q5T3J3 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
LRIF1Q5T3J3 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
LRIF1Q5T3J3 AC022898.2-201ENST00000616822 1312 ntBASIC17.01■□□□□ 0.31
LRIF1Q5T3J3 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
LRIF1Q5T3J3 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LRIF1Q5T3J3 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LRIF1Q5T3J3 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LRIF1Q5T3J3 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LRIF1Q5T3J3 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LRIF1Q5T3J3 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms