Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 NARF-204ENST00000390006 1766 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 LY6E-205ENST00000519611 635 ntTSL 3 BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CCDC58Q4VC31 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 AC026366.1-201ENST00000488803 879 ntBASIC16.18■□□□□ 0.18
CCDC58Q4VC31 AP002982.1-201ENST00000492365 877 ntBASIC16.18■□□□□ 0.18
CCDC58Q4VC31 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 AC034236.2-201ENST00000606662 1610 ntBASIC16.18■□□□□ 0.18
CCDC58Q4VC31 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 FER1L4-210ENST00000615531 5998 ntBASIC16.18■□□□□ 0.18
CCDC58Q4VC31 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CCDC58Q4VC31 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 AC006116.8-202ENST00000587620 1550 ntBASIC16.17■□□□□ 0.18
CCDC58Q4VC31 AL136379.1-201ENST00000623471 2642 ntBASIC16.17■□□□□ 0.18
CCDC58Q4VC31 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 CROCCP2-202ENST00000412962 2773 ntBASIC16.17■□□□□ 0.18
CCDC58Q4VC31 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 SERF2-207ENST00000409614 582 ntTSL 2 BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 AC110285.5-201ENST00000611501 352 ntBASIC16.17■□□□□ 0.18
CCDC58Q4VC31 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 AC011676.5-201ENST00000624864 2660 ntBASIC16.17■□□□□ 0.18
CCDC58Q4VC31 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.17■□□□□ 0.18
CCDC58Q4VC31 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms