Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 ADH5P3-201ENST00000433842 1137 ntBASIC19.03■□□□□ 0.64
CHD9Q3L8U1 AC087641.1-201ENST00000557561 1021 ntBASIC19.03■□□□□ 0.64
CHD9Q3L8U1 AC093520.2-201ENST00000561830 333 ntBASIC19.03■□□□□ 0.64
CHD9Q3L8U1 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
CHD9Q3L8U1 AC010507.1-201ENST00000633895 436 ntBASIC19.03■□□□□ 0.64
CHD9Q3L8U1 AL022326.1-202ENST00000641533 845 ntBASIC19.03■□□□□ 0.64
CHD9Q3L8U1 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHD9Q3L8U1 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHD9Q3L8U1 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHD9Q3L8U1 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC19.02■□□□□ 0.64
CHD9Q3L8U1 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.02■□□□□ 0.64
CHD9Q3L8U1 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHD9Q3L8U1 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CHD9Q3L8U1 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC19.02■□□□□ 0.64
CHD9Q3L8U1 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHD9Q3L8U1 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHD9Q3L8U1 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CHD9Q3L8U1 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CHD9Q3L8U1 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CHD9Q3L8U1 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.02■□□□□ 0.63
CHD9Q3L8U1 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC19.02■□□□□ 0.63
CHD9Q3L8U1 AC007274.1-201ENST00000439805 662 ntBASIC19.02■□□□□ 0.63
CHD9Q3L8U1 SLBP-205ENST00000488267 987 ntTSL 2 BASIC19.02■□□□□ 0.63
CHD9Q3L8U1 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC19.02■□□□□ 0.63
CHD9Q3L8U1 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CHD9Q3L8U1 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CHD9Q3L8U1 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
CHD9Q3L8U1 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHD9Q3L8U1 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHD9Q3L8U1 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHD9Q3L8U1 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CHD9Q3L8U1 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHD9Q3L8U1 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC19.01■□□□□ 0.63
CHD9Q3L8U1 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC19.01■□□□□ 0.63
CHD9Q3L8U1 AC092474.2-201ENST00000424288 719 ntBASIC19.01■□□□□ 0.63
CHD9Q3L8U1 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC19.01■□□□□ 0.63
CHD9Q3L8U1 SRP19-202ENST00000445150 833 ntTSL 2 BASIC19.01■□□□□ 0.63
CHD9Q3L8U1 CYB561-217ENST00000582997 877 ntTSL 5 BASIC19.01■□□□□ 0.63
CHD9Q3L8U1 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC19.01■□□□□ 0.63
CHD9Q3L8U1 AC004706.3-202ENST00000621574 984 ntBASIC19.01■□□□□ 0.63
CHD9Q3L8U1 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC19.01■□□□□ 0.63
CHD9Q3L8U1 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CHD9Q3L8U1 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC19.01■□□□□ 0.63
CHD9Q3L8U1 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHD9Q3L8U1 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHD9Q3L8U1 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CHD9Q3L8U1 AC015922.1-201ENST00000421102 1152 ntBASIC19.01■□□□□ 0.63
CHD9Q3L8U1 PAWRP1-201ENST00000451083 565 ntBASIC19.01■□□□□ 0.63
CHD9Q3L8U1 AC004877.2-201ENST00000623941 599 ntBASIC19.01■□□□□ 0.63
CHD9Q3L8U1 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC19.01■□□□□ 0.63
CHD9Q3L8U1 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHD9Q3L8U1 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CHD9Q3L8U1 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
CHD9Q3L8U1 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHD9Q3L8U1 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CHD9Q3L8U1 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHD9Q3L8U1 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC19■□□□□ 0.63
CHD9Q3L8U1 UGT1A2P-201ENST00000454886 866 ntBASIC19■□□□□ 0.63
CHD9Q3L8U1 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CHD9Q3L8U1 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHD9Q3L8U1 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC19■□□□□ 0.63
CHD9Q3L8U1 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CHD9Q3L8U1 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
CHD9Q3L8U1 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC19■□□□□ 0.63
CHD9Q3L8U1 AC132938.5-201ENST00000624980 1813 ntBASIC19■□□□□ 0.63
CHD9Q3L8U1 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CHD9Q3L8U1 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHD9Q3L8U1 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHD9Q3L8U1 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC19■□□□□ 0.63
CHD9Q3L8U1 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC19■□□□□ 0.63
CHD9Q3L8U1 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHD9Q3L8U1 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19■□□□□ 0.63
CHD9Q3L8U1 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
CHD9Q3L8U1 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CHD9Q3L8U1 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC19■□□□□ 0.63
CHD9Q3L8U1 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
CHD9Q3L8U1 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19■□□□□ 0.63
CHD9Q3L8U1 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CHD9Q3L8U1 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHD9Q3L8U1 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CHD9Q3L8U1 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC19■□□□□ 0.63
CHD9Q3L8U1 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.99■□□□□ 0.63
CHD9Q3L8U1 RHOQP3-201ENST00000437982 621 ntBASIC18.99■□□□□ 0.63
CHD9Q3L8U1 NMU-203ENST00000507338 658 ntTSL 3 BASIC18.99■□□□□ 0.63
CHD9Q3L8U1 IGHV3-65-201ENST00000523210 341 ntBASIC18.99■□□□□ 0.63
CHD9Q3L8U1 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.99■□□□□ 0.63
CHD9Q3L8U1 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHD9Q3L8U1 AQP6-203ENST00000551733 849 ntTSL 3 BASIC18.99■□□□□ 0.63
CHD9Q3L8U1 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CHD9Q3L8U1 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.99■□□□□ 0.63
CHD9Q3L8U1 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CHD9Q3L8U1 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms