Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC15.03■□□□□ -0
HOXA1P49639 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
HOXA1P49639 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC15.03■□□□□ -0
HOXA1P49639 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC15.03■□□□□ -0
HOXA1P49639 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HOXA1P49639 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
HOXA1P49639 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC15.03■□□□□ -0
HOXA1P49639 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
HOXA1P49639 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC15.03■□□□□ -0
HOXA1P49639 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC15.03■□□□□ -0
HOXA1P49639 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.02■□□□□ -0
HOXA1P49639 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC15.02■□□□□ -0
HOXA1P49639 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC15.02■□□□□ -0
HOXA1P49639 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC15.02■□□□□ -0
HOXA1P49639 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
HOXA1P49639 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.02■□□□□ -0
HOXA1P49639 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HOXA1P49639 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HOXA1P49639 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC15.02■□□□□ -0
HOXA1P49639 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC15.02■□□□□ -0
HOXA1P49639 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02■□□□□ -0
HOXA1P49639 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HOXA1P49639 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
HOXA1P49639 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HOXA1P49639 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HOXA1P49639 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC15.02■□□□□ -0
HOXA1P49639 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HOXA1P49639 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC15.02■□□□□ -0
HOXA1P49639 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC15.02■□□□□ -0
HOXA1P49639 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
HOXA1P49639 UNC93B5-201ENST00000530315 699 ntBASIC15.02■□□□□ -0
HOXA1P49639 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC15.02■□□□□ -0
HOXA1P49639 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC15.02■□□□□ -0
HOXA1P49639 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC15.02■□□□□ -0
HOXA1P49639 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC15.02■□□□□ -0
HOXA1P49639 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HOXA1P49639 AC134043.2-201ENST00000624206 2238 ntBASIC15.02□□□□□ -0.01
HOXA1P49639 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC15.02□□□□□ -0.01
HOXA1P49639 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HOXA1P49639 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HOXA1P49639 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC15.02□□□□□ -0.01
HOXA1P49639 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC15.02□□□□□ -0.01
HOXA1P49639 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HOXA1P49639 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HOXA1P49639 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HOXA1P49639 KRT8P41-201ENST00000533985 1514 ntBASIC15.02□□□□□ -0.01
HOXA1P49639 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
HOXA1P49639 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC15.01□□□□□ -0.01
HOXA1P49639 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.01□□□□□ -0.01
HOXA1P49639 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC15.01□□□□□ -0.01
HOXA1P49639 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
HOXA1P49639 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.01□□□□□ -0.01
HOXA1P49639 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 KRT17P3-201ENST00000420566 1262 ntBASIC15.01□□□□□ -0.01
HOXA1P49639 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
HOXA1P49639 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC15.01□□□□□ -0.01
HOXA1P49639 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
HOXA1P49639 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC15.01□□□□□ -0.01
HOXA1P49639 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC15.01□□□□□ -0.01
HOXA1P49639 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC15.01□□□□□ -0.01
HOXA1P49639 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.01□□□□□ -0.01
HOXA1P49639 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
HOXA1P49639 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
HOXA1P49639 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC15.01□□□□□ -0.01
HOXA1P49639 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HOXA1P49639 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC15□□□□□ -0.01
HOXA1P49639 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
HOXA1P49639 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HOXA1P49639 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
HOXA1P49639 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HOXA1P49639 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC15□□□□□ -0.01
HOXA1P49639 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
HOXA1P49639 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
HOXA1P49639 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC15□□□□□ -0.01
HOXA1P49639 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
HOXA1P49639 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC15□□□□□ -0.01
HOXA1P49639 AC108860.2-201ENST00000562760 2183 ntBASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms