Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC13.97□□□□□ -0.17
HOXD3P31249 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC13.97□□□□□ -0.17
HOXD3P31249 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
HOXD3P31249 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
HOXD3P31249 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC13.97□□□□□ -0.17
HOXD3P31249 HES2-202ENST00000377836 507 ntTSL 2 BASIC13.97□□□□□ -0.17
HOXD3P31249 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
HOXD3P31249 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC13.97□□□□□ -0.17
HOXD3P31249 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC13.97□□□□□ -0.17
HOXD3P31249 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC13.97□□□□□ -0.17
HOXD3P31249 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC13.97□□□□□ -0.17
HOXD3P31249 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC13.97□□□□□ -0.17
HOXD3P31249 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC13.97□□□□□ -0.17
HOXD3P31249 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
HOXD3P31249 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
HOXD3P31249 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD3P31249 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HOXD3P31249 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HOXD3P31249 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC13.96□□□□□ -0.17
HOXD3P31249 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
HOXD3P31249 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
HOXD3P31249 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
HOXD3P31249 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC13.96□□□□□ -0.17
HOXD3P31249 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
HOXD3P31249 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HOXD3P31249 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HOXD3P31249 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HOXD3P31249 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HOXD3P31249 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HOXD3P31249 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
HOXD3P31249 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC13.96□□□□□ -0.17
HOXD3P31249 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HOXD3P31249 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC13.96□□□□□ -0.17
HOXD3P31249 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
HOXD3P31249 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HOXD3P31249 AL022342.1-201ENST00000400363 863 ntBASIC13.96□□□□□ -0.17
HOXD3P31249 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC13.96□□□□□ -0.17
HOXD3P31249 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC13.96□□□□□ -0.17
HOXD3P31249 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC13.96□□□□□ -0.17
HOXD3P31249 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC13.96□□□□□ -0.17
HOXD3P31249 AC099336.1-202ENST00000602961 463 ntBASIC13.96□□□□□ -0.17
HOXD3P31249 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
HOXD3P31249 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC13.96□□□□□ -0.17
HOXD3P31249 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC13.96□□□□□ -0.17
HOXD3P31249 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HOXD3P31249 ESPNP-201ENST00000270691 2015 ntBASIC13.96□□□□□ -0.17
HOXD3P31249 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
HOXD3P31249 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HOXD3P31249 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
HOXD3P31249 LINC01126-201ENST00000623515 1646 ntBASIC13.96□□□□□ -0.17
HOXD3P31249 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
HOXD3P31249 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
HOXD3P31249 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.18
HOXD3P31249 AL353692.3-201ENST00000407031 1396 ntBASIC13.96□□□□□ -0.18
HOXD3P31249 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC13.95□□□□□ -0.18
HOXD3P31249 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXD3P31249 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
HOXD3P31249 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD3P31249 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC13.95□□□□□ -0.18
HOXD3P31249 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD3P31249 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD3P31249 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXD3P31249 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD3P31249 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
HOXD3P31249 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD3P31249 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD3P31249 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD3P31249 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC13.95□□□□□ -0.18
HOXD3P31249 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD3P31249 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD3P31249 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
HOXD3P31249 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
HOXD3P31249 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC13.95□□□□□ -0.18
HOXD3P31249 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXD3P31249 AC113404.2-201ENST00000507884 177 ntBASIC13.95□□□□□ -0.18
HOXD3P31249 AL160237.2-201ENST00000556165 472 ntBASIC13.95□□□□□ -0.18
HOXD3P31249 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
HOXD3P31249 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC13.95□□□□□ -0.18
HOXD3P31249 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC13.95□□□□□ -0.18
HOXD3P31249 AC090616.6-201ENST00000582640 721 ntBASIC13.95□□□□□ -0.18
HOXD3P31249 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms