Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC19.01■□□□□ 0.63
BDNFP23560 NUS1P2-201ENST00000417358 873 ntBASIC19.01■□□□□ 0.63
BDNFP23560 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.01■□□□□ 0.63
BDNFP23560 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
BDNFP23560 AC111152.3-201ENST00000569699 673 ntBASIC19.01■□□□□ 0.63
BDNFP23560 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC19.01■□□□□ 0.63
BDNFP23560 IFNL4P1-201ENST00000607083 540 ntBASIC19.01■□□□□ 0.63
BDNFP23560 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.01■□□□□ 0.63
BDNFP23560 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.01■□□□□ 0.63
BDNFP23560 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
BDNFP23560 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
BDNFP23560 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC19.01■□□□□ 0.63
BDNFP23560 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
BDNFP23560 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
BDNFP23560 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.01■□□□□ 0.63
BDNFP23560 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
BDNFP23560 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
BDNFP23560 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
BDNFP23560 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
BDNFP23560 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
BDNFP23560 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
BDNFP23560 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19■□□□□ 0.63
BDNFP23560 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19■□□□□ 0.63
BDNFP23560 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19■□□□□ 0.63
BDNFP23560 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
BDNFP23560 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
BDNFP23560 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC19■□□□□ 0.63
BDNFP23560 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC19■□□□□ 0.63
BDNFP23560 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC19■□□□□ 0.63
BDNFP23560 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19■□□□□ 0.63
BDNFP23560 FICD-205ENST00000552758 603 ntTSL 2 BASIC19■□□□□ 0.63
BDNFP23560 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19■□□□□ 0.63
BDNFP23560 RN7SL510P-201ENST00000581311 263 ntBASIC19■□□□□ 0.63
BDNFP23560 BNIP3P18-201ENST00000593976 575 ntBASIC19■□□□□ 0.63
BDNFP23560 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19■□□□□ 0.63
BDNFP23560 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
BDNFP23560 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
BDNFP23560 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC19■□□□□ 0.63
BDNFP23560 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
BDNFP23560 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
BDNFP23560 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19■□□□□ 0.63
BDNFP23560 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
BDNFP23560 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
BDNFP23560 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
BDNFP23560 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC19■□□□□ 0.63
BDNFP23560 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19■□□□□ 0.63
BDNFP23560 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC19■□□□□ 0.63
BDNFP23560 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC19■□□□□ 0.63
BDNFP23560 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
BDNFP23560 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.99■□□□□ 0.63
BDNFP23560 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.99■□□□□ 0.63
BDNFP23560 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.99■□□□□ 0.63
BDNFP23560 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.99■□□□□ 0.63
BDNFP23560 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.99■□□□□ 0.63
BDNFP23560 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
BDNFP23560 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 TPM4P1-201ENST00000436100 807 ntBASIC18.99■□□□□ 0.63
BDNFP23560 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC18.99■□□□□ 0.63
BDNFP23560 AC096582.2-201ENST00000510860 516 ntBASIC18.99■□□□□ 0.63
BDNFP23560 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.99■□□□□ 0.63
BDNFP23560 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.99■□□□□ 0.63
BDNFP23560 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.99■□□□□ 0.63
BDNFP23560 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
BDNFP23560 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
BDNFP23560 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
BDNFP23560 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC18.99■□□□□ 0.63
BDNFP23560 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.99■□□□□ 0.63
BDNFP23560 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BDNFP23560 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
BDNFP23560 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
BDNFP23560 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.98■□□□□ 0.63
BDNFP23560 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
BDNFP23560 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
BDNFP23560 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
BDNFP23560 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.98■□□□□ 0.63
BDNFP23560 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms