Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LDLRP01130 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LDLRP01130 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.47■□□□□ 0.39
LDLRP01130 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
LDLRP01130 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LDLRP01130 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.47■□□□□ 0.39
LDLRP01130 AC004980.1-204ENST00000429707 299 ntBASIC17.47■□□□□ 0.39
LDLRP01130 TSPY23P-201ENST00000440136 739 ntBASIC17.47■□□□□ 0.39
LDLRP01130 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.47■□□□□ 0.39
LDLRP01130 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LDLRP01130 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.47■□□□□ 0.39
LDLRP01130 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.47■□□□□ 0.39
LDLRP01130 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
LDLRP01130 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LDLRP01130 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LDLRP01130 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.47■□□□□ 0.39
LDLRP01130 AC116562.4-202ENST00000641738 218 ntBASIC17.47■□□□□ 0.39
LDLRP01130 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LDLRP01130 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.47■□□□□ 0.39
LDLRP01130 AC012317.2-201ENST00000623305 2251 ntBASIC17.47■□□□□ 0.39
LDLRP01130 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
LDLRP01130 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LDLRP01130 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
LDLRP01130 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC17.47■□□□□ 0.39
LDLRP01130 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LDLRP01130 MTMR9LP-203ENST00000426597 1545 ntBASIC17.47■□□□□ 0.39
LDLRP01130 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.47■□□□□ 0.39
LDLRP01130 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LDLRP01130 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.46■□□□□ 0.39
LDLRP01130 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LDLRP01130 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
LDLRP01130 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LDLRP01130 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
LDLRP01130 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LDLRP01130 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.46■□□□□ 0.39
LDLRP01130 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.46■□□□□ 0.39
LDLRP01130 RCC2P6-201ENST00000526625 1557 ntBASIC17.46■□□□□ 0.39
LDLRP01130 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LDLRP01130 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.46■□□□□ 0.39
LDLRP01130 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
LDLRP01130 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.46■□□□□ 0.39
LDLRP01130 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LDLRP01130 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.46■□□□□ 0.39
LDLRP01130 HCG4P8-203ENST00000443049 980 ntBASIC17.46■□□□□ 0.39
LDLRP01130 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
LDLRP01130 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.46■□□□□ 0.39
LDLRP01130 SLC25A1P4-201ENST00000567977 778 ntBASIC17.46■□□□□ 0.39
LDLRP01130 CLEC4GP1-201ENST00000596555 870 ntBASIC17.46■□□□□ 0.39
LDLRP01130 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.46■□□□□ 0.39
LDLRP01130 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
LDLRP01130 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LDLRP01130 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LDLRP01130 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LDLRP01130 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LDLRP01130 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.46■□□□□ 0.39
LDLRP01130 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LDLRP01130 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LDLRP01130 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
LDLRP01130 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LDLRP01130 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LDLRP01130 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
LDLRP01130 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.38
LDLRP01130 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.46■□□□□ 0.38
LDLRP01130 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.46■□□□□ 0.38
LDLRP01130 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.46■□□□□ 0.38
LDLRP01130 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.38
LDLRP01130 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
LDLRP01130 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.38
LDLRP01130 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LDLRP01130 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.45■□□□□ 0.38
LDLRP01130 AC099398.1-201ENST00000567919 2776 ntBASIC17.45■□□□□ 0.38
LDLRP01130 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
LDLRP01130 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LDLRP01130 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
LDLRP01130 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LDLRP01130 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LDLRP01130 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LDLRP01130 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
LDLRP01130 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
LDLRP01130 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LDLRP01130 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
LDLRP01130 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.45■□□□□ 0.38
LDLRP01130 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.45■□□□□ 0.38
LDLRP01130 CYGB-204ENST00000589342 815 ntTSL 3 BASIC17.45■□□□□ 0.38
LDLRP01130 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC17.45■□□□□ 0.38
LDLRP01130 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
LDLRP01130 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
LDLRP01130 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC17.45■□□□□ 0.38
LDLRP01130 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
LDLRP01130 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
LDLRP01130 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
LDLRP01130 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
LDLRP01130 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
LDLRP01130 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
LDLRP01130 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDLRP01130 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDLRP01130 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
LDLRP01130 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
LDLRP01130 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.44■□□□□ 0.38
LDLRP01130 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms