Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
PROM1O43490 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
PROM1O43490 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
PROM1O43490 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PROM1O43490 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PROM1O43490 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PROM1O43490 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PROM1O43490 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PROM1O43490 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
PROM1O43490 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PROM1O43490 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PROM1O43490 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
PROM1O43490 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.16■□□□□ 0.34
PROM1O43490 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.16■□□□□ 0.34
PROM1O43490 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC17.16■□□□□ 0.34
PROM1O43490 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PROM1O43490 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PROM1O43490 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PROM1O43490 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PROM1O43490 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PROM1O43490 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
PROM1O43490 AC113404.2-201ENST00000507884 177 ntBASIC17.16■□□□□ 0.34
PROM1O43490 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.16■□□□□ 0.34
PROM1O43490 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.16■□□□□ 0.34
PROM1O43490 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.16■□□□□ 0.34
PROM1O43490 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.16■□□□□ 0.34
PROM1O43490 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
PROM1O43490 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PROM1O43490 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
PROM1O43490 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
PROM1O43490 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
PROM1O43490 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PROM1O43490 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
PROM1O43490 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
PROM1O43490 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
PROM1O43490 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
PROM1O43490 AL133373.2-201ENST00000623187 2828 ntBASIC17.16■□□□□ 0.34
PROM1O43490 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PROM1O43490 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PROM1O43490 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PROM1O43490 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
PROM1O43490 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
PROM1O43490 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PROM1O43490 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
PROM1O43490 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PROM1O43490 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PROM1O43490 LINC01311-201ENST00000565162 1445 ntBASIC17.15■□□□□ 0.34
PROM1O43490 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.15■□□□□ 0.34
PROM1O43490 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PROM1O43490 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.15■□□□□ 0.34
PROM1O43490 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.15■□□□□ 0.34
PROM1O43490 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PROM1O43490 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.15■□□□□ 0.34
PROM1O43490 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.15■□□□□ 0.34
PROM1O43490 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PROM1O43490 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.15■□□□□ 0.34
PROM1O43490 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC17.15■□□□□ 0.34
PROM1O43490 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PROM1O43490 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.15■□□□□ 0.34
PROM1O43490 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.15■□□□□ 0.34
PROM1O43490 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
PROM1O43490 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
PROM1O43490 TK1-205ENST00000590862 642 ntTSL 3 BASIC17.15■□□□□ 0.34
PROM1O43490 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.15■□□□□ 0.34
PROM1O43490 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
PROM1O43490 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.15■□□□□ 0.34
PROM1O43490 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.15■□□□□ 0.34
PROM1O43490 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
PROM1O43490 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.15■□□□□ 0.34
PROM1O43490 FLJ13224-201ENST00000313737 1514 ntBASIC17.15■□□□□ 0.34
PROM1O43490 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.15■□□□□ 0.34
PROM1O43490 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PROM1O43490 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PROM1O43490 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PROM1O43490 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
PROM1O43490 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
PROM1O43490 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PROM1O43490 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.14■□□□□ 0.34
PROM1O43490 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
PROM1O43490 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.14■□□□□ 0.33
PROM1O43490 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.14■□□□□ 0.33
PROM1O43490 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PROM1O43490 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PROM1O43490 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PROM1O43490 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PROM1O43490 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PROM1O43490 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PROM1O43490 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
PROM1O43490 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PROM1O43490 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.14■□□□□ 0.33
PROM1O43490 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
PROM1O43490 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PROM1O43490 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.14■□□□□ 0.33
PROM1O43490 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.14■□□□□ 0.33
PROM1O43490 MIR662-201ENST00000384847 95 ntBASIC17.14■□□□□ 0.33
PROM1O43490 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.14■□□□□ 0.33
PROM1O43490 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.14■□□□□ 0.33
PROM1O43490 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PROM1O43490 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PROM1O43490 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms