Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXC11O43248 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC18.34■□□□□ 0.53
HOXC11O43248 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HOXC11O43248 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXC11O43248 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXC11O43248 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC18.34■□□□□ 0.53
HOXC11O43248 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.34■□□□□ 0.53
HOXC11O43248 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
HOXC11O43248 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.34■□□□□ 0.53
HOXC11O43248 FAM220CP-201ENST00000395253 831 ntBASIC18.34■□□□□ 0.53
HOXC11O43248 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
HOXC11O43248 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXC11O43248 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
HOXC11O43248 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
HOXC11O43248 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HOXC11O43248 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXC11O43248 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXC11O43248 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC18.34■□□□□ 0.53
HOXC11O43248 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HOXC11O43248 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC18.34■□□□□ 0.53
HOXC11O43248 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HOXC11O43248 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HOXC11O43248 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
HOXC11O43248 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
HOXC11O43248 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
HOXC11O43248 PHGDH-209ENST00000641074 1780 ntBASIC18.33■□□□□ 0.53
HOXC11O43248 IL9RP2-201ENST00000423948 1312 ntBASIC18.33■□□□□ 0.53
HOXC11O43248 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.33■□□□□ 0.52
HOXC11O43248 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HOXC11O43248 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
HOXC11O43248 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.33■□□□□ 0.52
HOXC11O43248 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.33■□□□□ 0.52
HOXC11O43248 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.33■□□□□ 0.52
HOXC11O43248 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.33■□□□□ 0.52
HOXC11O43248 AC093909.1-201ENST00000504731 1122 ntBASIC18.33■□□□□ 0.52
HOXC11O43248 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HOXC11O43248 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC18.33■□□□□ 0.52
HOXC11O43248 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HOXC11O43248 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC18.33■□□□□ 0.52
HOXC11O43248 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HOXC11O43248 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HOXC11O43248 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
HOXC11O43248 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HOXC11O43248 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
HOXC11O43248 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.33■□□□□ 0.52
HOXC11O43248 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC11O43248 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
HOXC11O43248 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
HOXC11O43248 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC11O43248 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.32■□□□□ 0.52
HOXC11O43248 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.32■□□□□ 0.52
HOXC11O43248 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC11O43248 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC11O43248 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC11O43248 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC18.32■□□□□ 0.52
HOXC11O43248 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC11O43248 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC11O43248 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC11O43248 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC18.32■□□□□ 0.52
HOXC11O43248 AC096633.1-201ENST00000422446 749 ntBASIC18.32■□□□□ 0.52
HOXC11O43248 AC007967.3-201ENST00000434308 558 ntBASIC18.32■□□□□ 0.52
HOXC11O43248 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC18.32■□□□□ 0.52
HOXC11O43248 DUTP2-201ENST00000519164 463 ntBASIC18.32■□□□□ 0.52
HOXC11O43248 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC18.32■□□□□ 0.52
HOXC11O43248 MIR7706-201ENST00000613747 67 ntBASIC18.32■□□□□ 0.52
HOXC11O43248 FAM215A-202ENST00000632077 792 ntBASIC18.32■□□□□ 0.52
HOXC11O43248 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC11O43248 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC11O43248 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC11O43248 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC11O43248 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
HOXC11O43248 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC11O43248 TBC1D3P5-201ENST00000579401 1545 ntBASIC18.32■□□□□ 0.52
HOXC11O43248 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC11O43248 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
HOXC11O43248 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC11O43248 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC11O43248 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXC11O43248 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC11O43248 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC11O43248 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC11O43248 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
HOXC11O43248 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC11O43248 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC11O43248 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.31■□□□□ 0.52
HOXC11O43248 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC11O43248 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.31■□□□□ 0.52
HOXC11O43248 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC11O43248 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC11O43248 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC11O43248 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC11O43248 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
HOXC11O43248 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC11O43248 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.31■□□□□ 0.52
HOXC11O43248 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC11O43248 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC18.31■□□□□ 0.52
HOXC11O43248 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC18.31■□□□□ 0.52
HOXC11O43248 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.31■□□□□ 0.52
HOXC11O43248 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HOXC11O43248 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms