Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 PARP1-210ENST00000629232 477 ntTSL 5 BASIC14.56□□□□□ -0.08
HMGB3O15347 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGB3O15347 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGB3O15347 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGB3O15347 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
HMGB3O15347 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGB3O15347 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGB3O15347 KATNBL1P6-202ENST00000562413 1466 ntBASIC14.56□□□□□ -0.08
HMGB3O15347 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC14.56□□□□□ -0.08
HMGB3O15347 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGB3O15347 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC14.56□□□□□ -0.08
HMGB3O15347 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC14.56□□□□□ -0.08
HMGB3O15347 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
HMGB3O15347 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC14.56□□□□□ -0.08
HMGB3O15347 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGB3O15347 NCOR2-204ENST00000405201 8533 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
HMGB3O15347 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC14.56□□□□□ -0.08
HMGB3O15347 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
HMGB3O15347 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB3O15347 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB3O15347 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC14.55□□□□□ -0.08
HMGB3O15347 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB3O15347 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC14.55□□□□□ -0.08
HMGB3O15347 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC14.55□□□□□ -0.08
HMGB3O15347 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB3O15347 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
HMGB3O15347 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB3O15347 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB3O15347 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB3O15347 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB3O15347 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB3O15347 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC14.55□□□□□ -0.08
HMGB3O15347 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB3O15347 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC14.55□□□□□ -0.08
HMGB3O15347 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC14.55□□□□□ -0.08
HMGB3O15347 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB3O15347 ZNRF2P3-201ENST00000424200 374 ntBASIC14.55□□□□□ -0.08
HMGB3O15347 AC034268.1-201ENST00000441047 882 ntBASIC14.55□□□□□ -0.08
HMGB3O15347 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
HMGB3O15347 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC14.55□□□□□ -0.08
HMGB3O15347 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC14.55□□□□□ -0.08
HMGB3O15347 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB3O15347 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
HMGB3O15347 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC14.55□□□□□ -0.08
HMGB3O15347 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC14.55□□□□□ -0.08
HMGB3O15347 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB3O15347 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
HMGB3O15347 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB3O15347 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC14.55□□□□□ -0.08
HMGB3O15347 AC097376.2-205ENST00000610159 5334 ntBASIC14.55□□□□□ -0.08
HMGB3O15347 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
HMGB3O15347 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
HMGB3O15347 AC011676.5-201ENST00000624864 2660 ntBASIC14.55□□□□□ -0.08
HMGB3O15347 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC14.55□□□□□ -0.08
HMGB3O15347 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
HMGB3O15347 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
HMGB3O15347 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB3O15347 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC14.54□□□□□ -0.08
HMGB3O15347 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB3O15347 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB3O15347 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB3O15347 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB3O15347 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB3O15347 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
HMGB3O15347 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB3O15347 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB3O15347 MIR638-201ENST00000385237 100 ntBASIC14.54□□□□□ -0.08
HMGB3O15347 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
HMGB3O15347 SERPINH1P1-201ENST00000419794 1249 ntBASIC14.54□□□□□ -0.08
HMGB3O15347 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
HMGB3O15347 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC14.54□□□□□ -0.08
HMGB3O15347 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC14.54□□□□□ -0.08
HMGB3O15347 PHB2-213ENST00000546111 858 ntTSL 2 BASIC14.54□□□□□ -0.08
HMGB3O15347 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC14.54□□□□□ -0.08
HMGB3O15347 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC14.54□□□□□ -0.08
HMGB3O15347 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC14.54□□□□□ -0.08
HMGB3O15347 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
HMGB3O15347 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC14.54□□□□□ -0.08
HMGB3O15347 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
HMGB3O15347 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC14.54□□□□□ -0.08
HMGB3O15347 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB3O15347 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB3O15347 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB3O15347 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC14.54□□□□□ -0.08
HMGB3O15347 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB3O15347 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC14.54□□□□□ -0.08
HMGB3O15347 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC14.54□□□□□ -0.08
HMGB3O15347 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB3O15347 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB3O15347 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB3O15347 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB3O15347 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
HMGB3O15347 ZNF286B-205ENST00000545289 5328 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
HMGB3O15347 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC14.53□□□□□ -0.08
HMGB3O15347 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGB3O15347 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC14.53□□□□□ -0.08
HMGB3O15347 NKILA-202ENST00000614771 2598 ntBASIC14.53□□□□□ -0.08
HMGB3O15347 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HMGB3O15347 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC14.53□□□□□ -0.08
HMGB3O15347 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms