Protein–RNA interactions for Protein: A6NDI0

TRIM49B, Putative tripartite motif-containing protein 49B, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49BA6NDI0 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM49BA6NDI0 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM49BA6NDI0 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM49BA6NDI0 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM49BA6NDI0 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC19.93■□□□□ 0.78
TRIM49BA6NDI0 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC19.93■□□□□ 0.78
TRIM49BA6NDI0 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM49BA6NDI0 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM49BA6NDI0 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC19.93■□□□□ 0.78
TRIM49BA6NDI0 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM49BA6NDI0 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM49BA6NDI0 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM49BA6NDI0 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM49BA6NDI0 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM49BA6NDI0 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM49BA6NDI0 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC19.92■□□□□ 0.78
TRIM49BA6NDI0 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM49BA6NDI0 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM49BA6NDI0 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19.92■□□□□ 0.78
TRIM49BA6NDI0 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM49BA6NDI0 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM49BA6NDI0 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
TRIM49BA6NDI0 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM49BA6NDI0 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM49BA6NDI0 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.92■□□□□ 0.78
TRIM49BA6NDI0 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC19.92■□□□□ 0.78
TRIM49BA6NDI0 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.92■□□□□ 0.78
TRIM49BA6NDI0 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.92■□□□□ 0.78
TRIM49BA6NDI0 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM49BA6NDI0 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM49BA6NDI0 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
TRIM49BA6NDI0 AC139713.2-201ENST00000641328 2723 ntBASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 LINC00602-201ENST00000629776 2065 ntBASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM49BA6NDI0 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 DUTP2-201ENST00000519164 463 ntBASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 AC079602.3-201ENST00000623931 403 ntBASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 AC106820.2-201ENST00000563775 3264 ntBASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC19.9■□□□□ 0.78
TRIM49BA6NDI0 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
TRIM49BA6NDI0 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
TRIM49BA6NDI0 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
TRIM49BA6NDI0 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM49BA6NDI0 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.77
TRIM49BA6NDI0 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM49BA6NDI0 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM49BA6NDI0 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM49BA6NDI0 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM49BA6NDI0 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM49BA6NDI0 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
TRIM49BA6NDI0 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM49BA6NDI0 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM49BA6NDI0 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC19.89■□□□□ 0.77
TRIM49BA6NDI0 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms